NNNTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAACAGAGGAATCTCGAATGGCTGAGAAGCACCACCT
AAAGAAATGTTCAAAGTCCTTAGTGATCAGAGAAATGCAAATCAAAACAA
CCTTGAGATTCCACCATACACCAATCAGAATGACTAAAATCAAAACCTCA
GGTGAAAACACATGTTGGCAAGGATGTGGAGAAAGAGGAACAGTCCTCCA
TTGCTGGTGGGGTTGCAAACTGGTACAACCACTCTGGAAATCAATCTGGA
GGTTTCTCAGAAAATTGGAAATAGATCTACCTGAATATCCAGCAATACCA
CTCTTGGGAATATACCCAAAAGATGTCCTACCAGGCCACAGGGGAATGTG
TTCCACCATGTTCATAGAGGCCTTATTTGTGATAGCCAGAAGCTAGAAAC
AACCCAGATGTCCCATGACAGAGGAATGGATCAGAAAATGAGGTTCACTC
ACACAATGGAGTACTACTCAGCAATTAAGAACAAGGGCATCCTGAGTTTT
GCAGGTAAATGGATGGAACTAGAANATACCCTGAGTGAGGTAACTCAGAC
CCAGAAAGACAAGCATGGTATGCACTCACTAATAAGTGGATATTAACCAA
CAAAAAAAGTAAGAAAGTACTGAATACCCCTAAATTTCCNTNNTTCCCCC
CTCTTTTTCCCCCCTTTTTTTACCACACACTTCTTCTTTCT

NNNNNNNCCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGAGTCATTTTCAAA
AAATGGTATTAGTTATAATGAATTAAGAAAAAATCTTATTTGGAATTTTT
GGAGAAATATTAACTCAAGGGTTATATTCCTTTAGTTTCTTAAAGAATTC
AACACACTATCTTTTTTGACTGTGATGATTATTAGTATTATAGTAGAAAT
ATTTGGTACCATTTTACATATTTAGTCAATTGGCTTTTTAAATTTAATTA
GCTATAAATCACACTACAGTTTCCTATCAATTGGTTCTTCAAGGTAGGGC
TCAAAATTATGAGAAAGTGTACAACATTGCTCATTTTCACATTTTATTTT
TCTAAAATTATTGTGAGAGTACATATTCCTTGGTGTTTATATCTTAAGAT
GTGAGTGTTCAATATTTATTTATATGCAAATAGTGTGTGTCCTGTTCCTC
CAAATTGCAATGTTATCTAGAGATTGCAATGTTTGCTCCAAGAGGAAAGG
GACGCTCATGAGACTCAGGAGATTAAACAAAAGGTCACCAAAGGTCACAG
ATGAAGAGGGAATTTATTTTAAATGTTATTGAGGGCTTCTACCCAACAGA
GTACATGAGAGTGAACTGTTATCGAGAATAGAGACTCTTACCAGCCAAAA
TAGGAAAAAATGGTCAGAACATTTGAACTGCCCGTAAGCTACTTGGAGTG
CT

Query= MSMg01no351_d03.g1 MSMg01no351_d03.g1 CHROMAT_FILE:
MSMg01no351_d03.g1 PHD_FILE: MSMg01no351_d03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:23 2005
         (563 letters)



>mm_chr18_89727620_89728582
          Length = 963

 Score = 1006 bits (520), Expect = 0.0
 Identities = 553/564 (98%), Gaps = 2/564 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagagtcattttc-aaaaaatggtattagttataatgaattaagaaaaaatcttatttgg 59
           |||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 763 tagaatcattttcaaaaaaatggtattagttataatgaattaggaaaaaatcttatttgg 704

                                                                       
Query: 60  aatttttggagaaatattaactcaagggttatattcctttagtttcttaaagaattcaac 119
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 703 aatttttggagaaatattaactcaaggtttatattcctttagtttcttaaagaattcaac 644

                                                                       
Query: 120 acactatcttttttgactgtgatgattattagtattatagtagaaatatttggtaccatt 179
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643 acactatc-tttttgactgtgatgattattagtattatagtagaaatatttggtaccatt 585

                                                                       
Query: 180 ttacatatttagtcaattggctttttaaatttaattagctataaatcacactacagtttc 239
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 584 ttacatatttagtcaattggcttttttaatttaattagatataaatcacactacagtttc 525

                                                                       
Query: 240 ctatcaattggttcttcaaggtagggctcaaaattatgagaaagtgtacaacattgctca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 ctatcaattggttcttcaaggtagggctcaaaattatgagaaagtgtacaacattgctca 465

                                                                       
Query: 300 ttttcacattttatttttctaaaattattgtgagagtacatattccttggtgtttatatc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 ttttcacattttatttttctaaaattattgtgagagtacatattccttggtgtttatatc 405

                                                                       
Query: 360 ttaagatgtgagtgttcaatatttatttatatgcaaatagtgtgtgtcctgttcctccaa 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 ttaagatgtgagtgttcaatatttatttatatgcaaatagtgtgtgtcctgttcctccaa 345

                                                                       
Query: 420 attgcaatgttatctagagattgcaatgtttgctccaagaggaaagggacgctcatgaga 479
           |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 344 attgcaatgttatctagaaactgcaatgtttgctccaagaggaaagggacgctcatgaga 285

                                                                       
Query: 480 ctcaggagattaaacaaaaggtcaccaaaggtcacagatgaagagggaatttattttaaa 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct: 284 ctcaggagattaaacaaaaggtcaccaaaggtcacagatgaagagggaatttttttttaa 225

                                   
Query: 540 tgttattgagggcttctacccaac 563
           ||||||||||||||||||||||||
Sbjct: 224 tgttattgagggcttctacccaac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 563
Length of database: 963
Length adjustment: 10
Effective length of query: 553
Effective length of database: 953
Effective search space:   527009
Effective search space used:   527009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)