BAC Information

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BAC

Clone NameMSMg01-351I09
Chromosome18 (Build37)
Map Location 23,109,936 - 23,110,422
singlet/doubletsinglet
Overlap geneNol4
Upstream gene4921528I01Rik, LOC546708, LOC100040547, Asxl3
Downstream geneLOC100040579, LOC665797, Dtna, Mapre2, EG665813
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-351I09.T7 (MSMg01no351_i09.b1)MSMg01-351I09.TJ (MSMg01no351_i09.g1)
ACCAG462873AG462874
length754764
length of high quality
(start - end)		536 (55 - 590)487 (85 - 571)
definitionCHROMAT_FILE: MSMg01no351_i09.b1 PHD_FILE: MSMg01no351_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:47 2005CHROMAT_FILE: MSMg01no351_i09.g1 PHD_FILE: MSMg01no351_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNGGGTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTACTCAGCTATTCAAAACAATGAATTTATGTAATTC
CTAGACAAATGGATGGATCTGGAGAATATCATCGTGAGTGAGGTAACCCA
ATCACAAAAGAATATCTATGATATGCACTCACTGATAAGTGGATATTAGC
CCAGAAGCTCGGAATATCCAAGATACAATTCACAAAGCACATGAACTCAA
GAAGAAGGAAGACCAAAGTGTGGATACTTCAATCCTTTTTAGAAGGGAGA
ACAAAATAACTAGGAAAGGAGTTACAGAGACAAAGTGTGGAGCAGAGACT
GAAGGAATGACCATCCAGAGACTGTCCCACCTGGGAATTCATCTCATATA
CAACCACCAAACCCAGACACTATTGTGGATACCAACAAGGGCTTGCTGAC
AGGAACTGTCTCCTGAGAGTCTCTGCCAGTGCCTGACAATAATAGAAGTG
AATGTTCACAGCTATCCATTGGACTGAGCAGAGTCCCCTACGAAAGAGCT
AGAGAAAGGACCCAAGGAGCTGAAGGGGTTTACAGTCCCATAGAAGGAAC
AACCATATGAACTAACCAGTACCTCTAGAGCTTCCTGGGGGCTAAACCCC
CACCAAAGAGTACCCCTGGTGTGACTTTTGGCTCCCGTTTGATATGCACC
AAAAGAAGGCCCGGTTTGTGCCCCCCTATGATGGAAAGGGCTTTGGTTCC
TGGG

NNNNNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTACATTATTTCTTTA
AATATATATGTATGTATATATATGAAACATAATATTCCCAGTTAGATACC
TATAAAGAGGAAGGCATATTTGAAATGTTCAATGTGTCATAATATCTTAA
TTTTGTACTGGGAGATAAGAACATTTTTACAATCATTCAAATTTCTTCCA
TCTCAAGTCATACTAATGGATTTATATATTTTCTATTCCATCTTATAGCA
ACATTGATAAGAAAAACACATTATTTCATGTTATTTTATGTCTTAATTTT
CATGAACAGAATATTAAAATATGTTATTTTCATAGTACCATTCCCTTGAA
CATTTAAAAATTGAAGTATATGATTTTTTATAAATTATGCGAAAAGTATA
TTTAATTAACTATTTGAGAGTGGGATATATATTGTCAAAATTGAGTTATA
TTTTAGTTTTGAAGTTATTAATTAAACCTACATTTTGATATATACAGTTT
AATCTACATTTTATTTAATTGAAACTTTATAAAACCATATTACTATAGAT
ATTTTGCCCGTTCTAGCAAAATTGATGAGTAATTACCCTTTTGCCAATAC
CAGCCAAATGGACATTTGTAAGAGCTGTCTCCACCAAGGGGGAAAATGTT
CCTTTTTATAAATCCTTATTGAACTTCCCTTTTTGGCTACCGCTAATTGA
AATGGTTTTCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no351_i09.g1 MSMg01no351_i09.g1 CHROMAT_FILE:
MSMg01no351_i09.g1 PHD_FILE: MSMg01no351_i09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:47 2005
         (487 letters)



>mm_chr18_23109736_23110622
          Length = 887

 Score =  942 bits (487), Expect = 0.0
 Identities = 487/487 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttacattatttctttaaatatatatgtatgtatatatatgaaacataatattcccagtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ttacattatttctttaaatatatatgtatgtatatatatgaaacataatattcccagtta 628

                                                                       
Query: 61  gatacctataaagaggaaggcatatttgaaatgttcaatgtgtcataatatcttaatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gatacctataaagaggaaggcatatttgaaatgttcaatgtgtcataatatcttaatttt 568

                                                                       
Query: 121 gtactgggagataagaacatttttacaatcattcaaatttcttccatctcaagtcatact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtactgggagataagaacatttttacaatcattcaaatttcttccatctcaagtcatact 508

                                                                       
Query: 181 aatggatttatatattttctattccatcttatagcaacattgataagaaaaacacattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aatggatttatatattttctattccatcttatagcaacattgataagaaaaacacattat 448

                                                                       
Query: 241 ttcatgttattttatgtcttaattttcatgaacagaatattaaaatatgttattttcata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttcatgttattttatgtcttaattttcatgaacagaatattaaaatatgttattttcata 388

                                                                       
Query: 301 gtaccattcccttgaacatttaaaaattgaagtatatgattttttataaattatgcgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtaccattcccttgaacatttaaaaattgaagtatatgattttttataaattatgcgaaa 328

                                                                       
Query: 361 agtatatttaattaactatttgagagtgggatatatattgtcaaaattgagttatatttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 agtatatttaattaactatttgagagtgggatatatattgtcaaaattgagttatatttt 268

                                                                       
Query: 421 agttttgaagttattaattaaacctacattttgatatatacagtttaatctacattttat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agttttgaagttattaattaaacctacattttgatatatacagtttaatctacattttat 208

                  
Query: 481 ttaattg 487
           |||||||
Sbjct: 207 ttaattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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