Query= MSMg01no351_p09.b1 MSMg01no351_p09.b1 CHROMAT_FILE:
MSMg01no351_p09.b1 PHD_FILE: MSMg01no351_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:20 2005
(436 letters)
>mm_chr18_39900217_39901050
Length = 834
Score = 723 bits (374), Expect = 0.0
Identities = 417/432 (96%), Gaps = 2/432 (0%)
Strand = Plus / Minus
Query: 5 gaattcttagcctgccaggtaggtgggtagaattagatgtgtggaagacaaaagggtaac 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 gaattcttagccaggtaggtaggtgggtagaattagatgtgtggaagacaaaagggtaac 575
Query: 65 aaatgcaagaacaaagcccagagccacagatacctgccaatggagtgtgactgattctcg 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 aaatgcaagaacaaagcccagagccacagatacctgccaatggagtgtgactgattctca 515
Query: 125 cttaaggtcagggatatgaaagccatcctagaagacatacagtttgatctggttttggaa 184
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 514 cttaaggtcagggatatgaaagccatcctagaagacat--agtttgatctggctttggaa 457
Query: 185 gaaagatgagggataactcttagcaaagggccatgctcctacacagatgaaaccattatc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 gaaagatgagggataactcttagcaaagggccatgctcctacacagatgaaaccattatc 397
Query: 245 attactatcacattttacccaatccagacatagcataagcttccatcccccatttagtat 304
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 attactatcacatattacccaatccagacatagcataagcttccatcccccatttagtat 337
Query: 305 cttgagggtcaccaaaaactcaccattattaactggcacaggcatgaatcgcctcacctc 364
|||||||||||||||||||||||||||||| |||||||| || ||||||| |||||| ||
Sbjct: 336 cttgagggtcaccaaaaactcaccattatttactggcacggggatgaatctcctcacgtc 277
Query: 365 cttatatagccatttttagtaatcctaaaggcagccgcgttaagccaggtaataggggaa 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 276 cttatatagccatttttagtaatcctaaaggcagccacgttaagccaggtaataggggaa 217
Query: 425 tgtgagcaacca 436
||| ||||||||
Sbjct: 216 tgtaagcaacca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 834
Length adjustment: 9
Effective length of query: 427
Effective length of database: 825
Effective search space: 352275
Effective search space used: 352275
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no351_p09.g1 MSMg01no351_p09.g1 CHROMAT_FILE:
MSMg01no351_p09.g1 PHD_FILE: MSMg01no351_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:20 2005
(510 letters)
>mm_chr18_39773262_39774171
Length = 910
Score = 920 bits (476), Expect = 0.0
Identities = 502/511 (98%), Gaps = 1/511 (0%)
Strand = Plus / Plus
Query: 1 tgttacacagttctaactgcggtcacacacaaattaatagtattgtgtttttttatagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgttacacagttctaactgcggtcacacacaaattaatagtattgtgtttttttatagtt 260
Query: 61 tgtatgtaaaaagttatgaggcatagcttggaatatttgtatcatatgtacatgcataaa 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 tgtatgtaaaaagttatgaggcatagcttggaatattcgtatcatatgtacatgcataaa 320
Query: 121 catacagatatgtataaatttggaaaaccccaatttaattcaataataacttactgagca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catacagatatgtataaatttggaaaaccccaatttaattcaataataacttactgagca 380
Query: 181 ttcatcacatgccagagaaccttctagaatacaaagatggatcaggaatagactctgccc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatcacatgccagagaaccttctagaatacaaagatggatcaggaatagactctgccc 440
Query: 241 ttagggagctcaatacagttaaatgaaatacagacatatttttttattccttcctcncaa 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct: 441 ttagggagctcaatacagttaaatgaaatacagatatatttttttattccttcctggcaa 500
Query: 301 gggtgggtacagtttccaagacccaggaggggctaaaccattcatttattgctttagcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gggtgggtacagtttccaagacccaggaggggctaaaccattcatttattgctttagcaa 560
Query: 361 ccacattgctttccaaagttgttatttggcttggggtgggcagtaagttacagtttggcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccacattgctttccaaagttgttatttggcttggggtgggcagtaagttacagtttggcc 620
Query: 421 tttttcttattttttttttacatcaattttcagcttaaaaaaaa-cctgcaactaattta 479
|||||||||||||||||| | || |||||||||||||||||||| |||||||||||||||
Sbjct: 621 tttttcttatttttttttcaaataaattttcagcttaaaaaaaaacctgcaactaattta 680
Query: 480 aataattaaattattgcttaaaatttcttct 510
||||||||||||||||||||| |||||||||
Sbjct: 681 aataattaaattattgcttaagatttcttct 711
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
