BAC Information

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BAC

Clone NameMSMg01-352D15
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352D15.T7 (MSMg01no352_d15.b1)MSMg01-352D15.TJ (MSMg01no352_d15.g1)
ACCAG463406AG463407
length760753
length of high quality
(start - end)
368 (53 - 420)211 (84 - 294)
definitionCHROMAT_FILE: MSMg01no352_d15.b1 PHD_FILE: MSMg01no352_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:41 2005CHROMAT_FILE: MSMg01no352_d15.g1 PHD_FILE: MSMg01no352_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:41 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NCCCCTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTGTACTCACTGTCCTTTCAGGTCCACATTTGCTCTG
GCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTTTG
GAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCTCC
ACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAGGA
ATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTACTT
CATGTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCCTGG
CTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAATCTA
GTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCCAATCCTTTCTCCCT
TTTACACTTTTATTTTACTCTACTTTACCTCATTTTTCCTTCCCCCCCCT
CTCCTCTCTTTTTTCATTCCCTTCCTAACCTTCTCTCCACTTTTAACTTT
GATTGTACCCGACCCGCCTCTCACTTTCCCTTCCTTAAAACTATCCCTTC
TCATCTTACCCTCCTCCCCTTTTCTTTCTTCTCCCCCTCCCTTCTTTTTT
TTTTTCTTTTCTCTCACCCCATCCTCCCCTATATTTCTCTCTCTCCCCCG
TCTCATCTTC
NNNAACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGGAAATCATCACT
CAGGGACTTCAGGCAGAAAACTAGCCAGTCAGCCTCTGGATAGACAAGGC
TCAACAGTTCAGAGAACCAGGCCATCGCAAATAGTTCACAGACCTGCAAG
GAAGACATGCAGATCCCTGCCCCCCACCCTACCCCTCCCCCAGCCCCACC
CAAACATAGGGAGAAAAGGCAGTGTGGGGGAGGGGGAGGTGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTTNTTTTTTNTTTTTTTTTTTTTTTTT
TTNTTTTTTTTTTTTTTTNTNNNTTTTTTTTTTTTTNNNTTTTTTTTTTT
TTTTTNTTTTTTTNTTTTNNNNTTTTNTTTTTTTTTNTTTTTTTNTTTTT
TTTNTTTTTNTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTNTTTT
TTTTTTNTTTNNNTTTTTNTTTTTTTNNNTTTTTTTTTTTTTTTTNTTTT
TTTTTTTTTTTNNCCCNTTTTTTTTNTTTTTTNNTNTTTNNTTTTTTTTT
TNNTTTTTTTNNNNTNNTTNTTTTTTTTTNTTTTTTNTNTTTTTTTTTTT
TTTNNTTTTTTTNNTTTNTTTTTTTTTTTNNTTTTTTTTTTTTTNTTTTT
TTNNTTTTTTTNNNNNNTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTC
CTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_d15.b1 MSMg01no352_d15.b1 CHROMAT_FILE:
MSMg01no352_d15.b1 PHD_FILE: MSMg01no352_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:41 2005
         (368 letters)



>mm_chr18_40467472_40468238
          Length = 767

 Score =  369 bits (191), Expect = e-106
 Identities = 236/251 (94%), Gaps = 1/251 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgtactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 395

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 394 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 336

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctg 184
           | |||||||||||||||| |||||||||||||| | |||||||||||||||||| |||||
Sbjct: 335 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 276

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 275 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 216

                      
Query: 245 acttcatgttt 255
           |||||||||||
Sbjct: 215 acttcatgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 368
Length of database: 767
Length adjustment: 9
Effective length of query: 359
Effective length of database: 758
Effective search space:   272122
Effective search space used:   272122
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)