BAC Information

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BAC

Clone NameMSMg01-352F12
Chromosome18 (Build37)
Map Location 49,143,575 - 49,143,955
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352F12.T7 (MSMg01no352_f12.b1)MSMg01-352F12.TJ (MSMg01no352_f12.g1)
ACCAG463493AG463494
length775801
length of high quality
(start - end)
409 (72 - 480)381 (79 - 459)
definitionCHROMAT_FILE: MSMg01no352_f12.b1 PHD_FILE: MSMg01no352_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:51 2005CHROMAT_FILE: MSMg01no352_f12.g1 PHD_FILE: MSMg01no352_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:44:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTTTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCACCTGACGAATACTGAATGGCAGAGAAGCACCTGAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTT
GGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTC
CTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCT
GGGCATATATCCAGAAGATGCCCCAACGGGTAAGAAGGACACATGCTCCA
CTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCAACAGAGGAATGGATACAGAATATGTGGTACATCTACAC
AATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAG
CCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGTAACATATTTCC
CCATTTACCCCTCCCCCATGTATTCTCTGACAACTGGACATTAATCCCAA
CCCCCATGATACCCCTAATACAAAAAATCAATATTCTCATATCCTGGATC
CCCCCACCAATATAAACCGTAATGGGCCCCCTCTGCCCTCTCCTATTATC
AGTGAACAAACCTCCTCCCATTCTG
NNTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTTTTTCTGATTTTTAGTGT
TGAGGTATCCATCTAAGAGTTATTGATCATTGTAAGAAATGCAGAAATAT
CATATAGAAGGCCAAGATTAAAAAAATAAAATACAATTAACTATATGAAA
AATAAGCTAATATTATTCCTATAGCAAGGATAAATATCTTTACTCATTTC
TAATATTTATTCATCATCAGAAAATATATGCCTTACTTTATGTGTTTTTA
AACATTAAGCAACATATTTTGTTTAGGGAGTTTTTAAACAAACTTTTAAA
AGATGCTTTCTCTTTTCCACTGTATGTGTTTGGTTTCTTTGTCAAAGATC
AAGTGTCCATAGGTGTGAGGCTTTATTTCTGGGTCTTTGATTCTATTCCA
TTGATCAACCTGTCTGCCTTTGTACCAATACCATGCGGGCTTTATCACTA
TTGCCTTGCACCACAGTTCCTTGTCACGCGTGCCCATTCCCCCATACGTT
TCCTTCATTGTCGCACAATCTTCTCCTCTCTCCCCCCCCCCCTTTCCTTT
TTCCTTCTTCCATTACCCCTTCCCCCTCTTTCTTCCCCTTTATTCCCCCT
CTTCCCCTTTCTTCTCCCTCTTTTCATCCCCCTCTTTCTTTTTTTCCCCC
CCTCCCCCCCTTTTCTCCCACCACTTTACCCTCCCCTCCCCCACTTCTTT
TATTTTCCGCCTTTCCCTCTTTCCTATCCGCTTATTCCCTTCTCCTTCTC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_f12.g1 MSMg01no352_f12.g1 CHROMAT_FILE:
MSMg01no352_f12.g1 PHD_FILE: MSMg01no352_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:44:51 2005
         (381 letters)



>mm_chr18_49143485_49144265
          Length = 781

 Score =  706 bits (365), Expect = 0.0
 Identities = 377/381 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctttttctgatttttagtgttgaggtatccatctaagagttattgatcattgtaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttctttttctgatttttagtgttgaggtatccatctaagagttattgatcattgtaagaa 412

                                                                       
Query: 61  atgcagaaatatcatatagaaggccaagattaaaaaaataaaatacaattaactatatga 120
           |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||
Sbjct: 411 atgcagaaatatcatatagaagaccaagattaaaataataaaatacaattaactatctga 352

                                                                       
Query: 121 aaaataagctaatattattcctatagcaaggataaatatctttactcatttctaatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaataagctaatattattcctatagcaaggataaatatctttactcatttctaatattt 292

                                                                       
Query: 181 attcatcatcagaaaatatatgccttactttatgtgtttttaaacattaagcaacatatt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atgcatcatcagaaaatatatgccttactttatgtgtttttaaacattaagcaacatatt 232

                                                                       
Query: 241 ttgtttagggagtttttaaacaaacttttaaaagatgctttctcttttccactgtatgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttgtttagggagtttttaaacaaacttttaaaagatgctttctcttttccactgtatgtg 172

                                                                       
Query: 301 tttggtttctttgtcaaagatcaagtgtccataggtgtgaggctttatttctgggtcttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 tttggtttctttgtcaaagatcaagtgtccataggtgtgaggctttatttctgggtcttt 112

                                
Query: 361 gattctattccattgatcaac 381
           |||||||||||||||||||||
Sbjct: 111 gattctattccattgatcaac 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)