BAC Information

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BAC

Clone NameMSMg01-352P07
Chromosome18 (Build37)
Map Location 57,643,430 - 57,643,865
singlet/doubletsinglet
Overlap genenone
Upstream geneGramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171, Lmnb1, March3, C330018D20Rik, Megf10, LOC672445, Prrc1
Downstream gene1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik, Fbn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-352P07.T7 (MSMg01no352_p07.b1)MSMg01-352P07.TJ (MSMg01no352_p07.g1)
ACCAG463953AG463954
length766761
length of high quality
(start - end)
123 (57 - 179)417 (87 - 503)
definitionCHROMAT_FILE: MSMg01no352_p07.b1 PHD_FILE: MSMg01no352_p07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:41 2005CHROMAT_FILE: MSMg01no352_p07.g1 PHD_FILE: MSMg01no352_p07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:45:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGCACAAATCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAA
NGGATCCGCGGAATTCATATTTTCCAGACTAATTAATCTCTGTCTCTGTC
TCTGTCTCTGTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTCTCTGTGAG
ATATATTTGCATCTGTGTGCATGTATAATAAGGATAGAAGGAGGAAGAGG
TCAGGTGTCTCCTTCTATTGCTTTCCACCTTAGTTTTTGAGACAAGGTGC
CTCATTGGGCTGGGAGCATATTGTTTTGGCTGCCTTGCTGAGCTGGATTG
CTTTGATGATTCCTGCGCATTCGTTTTTTTTTGATTTTTTGCACTTGCCT
ATTCTTGCTTTACCCCCTGCTTCATTCCCCACATTATTTCTCTATTTGTC
TTCTTGCTTGTTTTTTTTTTAGCCACACCTTTGTTAACCATAAAAAAATT
GTATATTAACAATCATTTTTTTTTGTTTTTCCATTTCATCCTTCCCTTTC
TCCTTTTTCTATTTCTCCTTATTTACCCTTCCTTTTTATATTCGCCCCTC
TTTCCATTTCTTTCTTTCAATCACTTTCTTTCACTTTGTTAAATTTTATA
CTTGTGTTTTATCCCCACTCCACCCGTCACTTTCCACTTAACTATATATT
TCTGTTTTTATCTTTCATCCCTTCCCTTTTTCTCTCTTATTCCCCTTCCC
CTTTTTTTTTTTTTCTTTTCCTTTAACCCCACCTACTCTAATTTCTTTCC
TACCTCTTCTTTTCTT
NCCTTTTTTCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACATAGAATGATG
AATCCAGGTTGCTGCAGTCTGGTGCTTGTCCTTAGTTGCAATCTCAAGTT
GATGTGCACGAGGCTGATAGCCTTTGCCACCAGAGTTTTCCCATGTGTAA
CCAGAGTCACAGAGTGAGAACCAGGTGGGAGCGAGGCCAAGCCAATGTGG
GCAGAGTCCCCGGTTGCTCCCAGTGCTGTCTCCCACTGTCCAATTTGAAT
CCGTGATATTTGATCTGTGCTCTGTAAGGCACATAAATATCACTTTGTGT
TTCCTTGCCTTCTGGTACTTGGTGCAAGCATTAGGTCTTTGTGCTCCTTG
TAAGCATCTTCTTCAAGTTTCCCAAGCTTCTCTCTGGCTCTCTGGCTCTC
TGTCTCTCTCTCCTCTCTCTCTCCTCTCTTCTCCCTCACTCTTTCTTTTT
TTCCTTCACCTTTCTTCCTCTAGGAATTAATCCTTAATGTTCGCCATATA
TACTTTTTCACCCCTATATTATCTATTCTCCCCCTTATACGCACCCTATT
CCTTTATTTCCCCCTTCTCTCCTCTTCTCCCTTTATCCCCCCCTTTTTCT
TAACCCCCACCTCTTTTTCTCTTCTTACTATGTACATTTTCATCCCAAAT
TCCCTTCCTTACTCTTCCTCCCCTCTTACTCACCCCTTCATCCCTCTCTC
TTTTCTCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no352_p07.g1 MSMg01no352_p07.g1 CHROMAT_FILE:
MSMg01no352_p07.g1 PHD_FILE: MSMg01no352_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:45:41 2005
         (417 letters)



>mm_chr18_57643326_57644142
          Length = 817

 Score =  696 bits (360), Expect = 0.0
 Identities = 407/436 (93%), Gaps = 24/436 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   cacatagaatgatgaatccaggttgctgcagtctggtgcttgtccttagttgcaatctca 60
           |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct: 540 cacatagaatgatgaatccaggttgctgaagtccggtgcttgtccttagttgcaatctca 481

                                                                       
Query: 61  agttgatgtgcacgaggctgatagcctttgccaccagagttttcccatgtgtaaccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agttgatgtgcacgaggctgatagcctttgccaccagagttttcccatgtgtaaccagag 421

                                                                       
Query: 121 tcacagagtgagaaccaggtgggagcgaggccaagccaatgtgggcagagtccccggttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tcacagagtgagaaccaggtgggagcgaggccaagccaatgtgggcagagtccccggttg 361

                                                                       
Query: 181 ctcccagtgctgtctcccactgtccaatttgaatccgtgatatttgatctgtgctctgta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ctcccagtgctgtctcccactgtccaatttgaatccgtgatatttgatctgtgctctgta 301

                                                                       
Query: 241 aggcacataaatatcactttgtgtttccttgccttctggtacttggtgcaagcattaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 aggcacataaatatcactttgtgtttccttgccttctggtacttggtgcaagcattaggt 241

                                                                       
Query: 301 ctttgtgctccttgtaagcatcttcttcaagtttcccaagcttctctctggctctctggc 360
           |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
Sbjct: 240 ctttgtgctccttgtaagcatcttcttcaagtttcccaagtttctctctgtctctctgtc 181

                                                                       
Query: 361 tctctgtctctct--ctc-----ctctct----ctctcctctct-------------tct 396
           |||||||||||||  |||     ||||||    |||||||||||             |||
Sbjct: 180 tctctgtctctctgtctctctgtctctctgtctctctcctctctctctctcctctcctct 121

                           
Query: 397 ccctcactctttcttt 412
           ||||||||||||||||
Sbjct: 120 ccctcactctttcttt 105


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 417
Length of database: 817
Length adjustment: 9
Effective length of query: 408
Effective length of database: 808
Effective search space:   329664
Effective search space used:   329664
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)