Query= MSMg01no353_j21.b1 MSMg01no353_j21.b1 CHROMAT_FILE:
MSMg01no353_j21.b1 PHD_FILE: MSMg01no353_j21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:32 2005
(493 letters)
>mm_chr18_79041450_79042342
Length = 893
Score = 888 bits (459), Expect = 0.0
Identities = 487/509 (95%), Gaps = 20/509 (3%)
Strand = Plus / Minus
Query: 5 gaattctctgcccagaagcgtttggcttgagggcatctaatgtac--------------- 49
||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 758 gaattctctgcccagaagcgtttggcttgagggcatccaatgtacaaaaaaaaaaaaaaa 699
Query: 50 -----aaaaaaaaaagtggctcctgagaggattgtgggttaaaaagaagacacagaaact 104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 698 aaaaaaaaaaaaaaagtggctcctgagaggattgtgggttaaaaagaagacacagaaact 639
Query: 105 cactaaggaccttacagggttagggctgtgtctcaaatctggtaaactggacattttcat 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 cactaaggaccttacagggttagggctgtgtctcaaatctggtaaactggacattttcat 579
Query: 165 tgtttgattctattaaatttaagagtcttattagtaaagaaaaatcagaagagcctaaaa 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgtttgattctattaaatttaagagtcttattagtaaagaaaaatcagaagagcctaaaa 519
Query: 225 agtaaaaggtacactccttatagtccactgtcccaacaggcgttgtgacagtgtatgcat 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 agtaaaaggtacactccttatagtccactgtcccaacaggcgttgtgacagtgtatgcat 459
Query: 285 actcgtccccaacccaaggtaaccatcgctctgcatccttgcctgtctgcttctcctcct 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 actcgtccccaacccaaggtaaccatcgctctgcatccttgcctgtctgcttctcctcct 399
Query: 345 actccccagtcctccgtccacccactcctcttcttcctctcttccatcatactttacttg 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 actccccagtcctccgtccacccactcctcttcttcctctcttccatcatactttacttg 339
Query: 405 tctgctctttcaagttttctcctaaatgcctcttcatattagcctgagataaccattcct 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tctgctctttcaagttttctcctaaatgcctcttcatattagcctgagataaccattcct 279
Query: 465 tctgcatgttgtcactacccacacaggga 493
|||||||||||||||||||| ||||||||
Sbjct: 278 tctgcatgttgtcactaccctcacaggga 250
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space: 426489
Effective search space used: 426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_j21.g1 MSMg01no353_j21.g1 CHROMAT_FILE:
MSMg01no353_j21.g1 PHD_FILE: MSMg01no353_j21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:32 2005
(455 letters)
>mm_chr18_78918044_78918894
Length = 851
Score = 803 bits (415), Expect = 0.0
Identities = 445/457 (97%), Gaps = 7/457 (1%)
Strand = Plus / Plus
Query: 1 attaaactttccacttctatatagtcatgttcagcaaggggaaattgcagtccatggcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaaactttccacttctatatagtcatgttcagcaaggggaaattgcagtccatggcaa 260
Query: 61 accacacatacaatggaagtcccataaaacagaatgtacttgagaactcttgttgcctag 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 261 accacacatacaatggaagtcccataaaacagaatgcacttgagaactcttgttgcctag 320
Query: 121 tgaggttgtagtcatcataagatctcagcacattgcatgaactgcatgcatgtcagtggt 180
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 321 tgaggttgtagtcatcataagatctcagcacattgcatgaactgc--g--tgtcagtggt 376
Query: 181 gatactgttatgaacaagcctacagcactgccagttatgtaaaagaatatgtcagaagtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gatactgttatgaacaagcctacagcactgccagttatgtaaaagaatatgtcagaagtg 436
Query: 241 gtgatgctatttatacagcacttgcgaggctgaggtaataggaattaagtttgaggccag 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 437 gtgatgctatttatacagcacttgcgaggctgaggtaataggaagtaagtttgaggccag 496
Query: 301 catgagctgcaacatgagttctaggcccacctaggcaatgggagcccatttgcataatac 360
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct: 497 catgagctgcaacatgagttctaggcccacctaggcaatgggatcccatttgca-aatac 555
Query: 361 acataatacacaatacttcctgttgataacaagtgacacaca--tatatatagagagaga 418
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 556 acataatacacaatacttcctgttgataacaagtgacacacacatatatatatagagaga 615
Query: 419 gtatgtatatatgcatgtatgtatatacttttgttgt 455
|||||||||||||||||||||||||||||| ||||||
Sbjct: 616 gtatgtatatatgcatgtatgtatatacttatgttgt 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 851
Length adjustment: 10
Effective length of query: 445
Effective length of database: 841
Effective search space: 374245
Effective search space used: 374245
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
