Query= MSMg01no353_l04.b1 MSMg01no353_l04.b1 CHROMAT_FILE:
MSMg01no353_l04.b1 PHD_FILE: MSMg01no353_l04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:38 2005
(451 letters)
>mm_chr18_58958734_58959586
Length = 853
Score = 748 bits (387), Expect = 0.0
Identities = 433/449 (96%), Gaps = 2/449 (0%)
Strand = Plus / Plus
Query: 5 gaattcaatggcttctggccaatgaagaaaatcaccaacaggttcaatattgtaaattgt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatggcttctggccaatgaagaaaatcaccaacaggttcaatattgtaaattgt 264
Query: 65 atcttatactttagagacctgttagtatggttattcacatttttaggtaaccccagagat 124
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 265 atcttatactttagagacctgttagtatggttattcacatatttaggtaactccagagat 324
Query: 125 tcattgaggttggaatgatagatacaaatagcatctacaaccctaacgtttatattttta 184
||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 325 tcattgaggttggaatgatggatccaaatagcatctacaaccctaacatttatattttta 384
Query: 185 atcctatagcgttgaagacatgtttcatgatttggcgattaacttgtacatgtgcgtatt 244
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct: 385 atcctatagcgttgaagacatgtttcatgatttgacgattaacttgtacatgtgcatatt 444
Query: 245 aataaagtcagttgcaagtcagcaacataaactttagggacagagggtcactatgggttt 304
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 445 aataaagtcagttgcaagtcagcaacataaactttagggacagagggtcactgtgggttt 504
Query: 305 gcaggctgtctcagcgtgcactgaaatatttgctgtcagtgttcatgtgtgcggacgcag 364
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 505 gcaggctgtctcagtgtgcactgaaatatttgctgtcagtgttcatgtgtgtggacgcag 564
Query: 365 acattcaatgaaaggctgaaaacggtgtagttcttcatttccattctttctttttttt-- 422
|||||||||||| ||||||||| |||||||||||||| ||| ||||||||||||||||
Sbjct: 565 acattcaatgaatggctgaaaatggtgtagttcttcacttctattctttctttttttttt 624
Query: 423 cttatggtatgatattatcttgttcattc 451
|||||||||||||||||||||||||||||
Sbjct: 625 cttatggtatgatattatcttgttcattc 653
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 451
Length of database: 853
Length adjustment: 10
Effective length of query: 441
Effective length of database: 843
Effective search space: 371763
Effective search space used: 371763
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no353_l04.g1 MSMg01no353_l04.g1 CHROMAT_FILE:
MSMg01no353_l04.g1 PHD_FILE: MSMg01no353_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:39 2005
(389 letters)
>mm_chr18_59183209_59183997
Length = 789
Score = 706 bits (365), Expect = 0.0
Identities = 380/385 (98%)
Strand = Plus / Minus
Query: 1 cccaaagcacacaaacaggtacattgacatctaaagatttcattgctatccgtagcagtg 60
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 585 cccaaagcatacaaacaggtacatggacatctaaagatttcattgctatccgtagcagtg 526
Query: 61 ttctatagcaaaggatagaaagtactattttttccgagtgtacctgatgttttcattcat 120
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct: 525 ttctatagcaaaggatagaaagtactgttttttccgagtgtacctgatgttttcattcgt 466
Query: 121 agtgcttctgacaacagccctaagaattctagaaacaactatcactttcctttgataaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 agtgcttctgacaacagccctaagaattctagaaacaactatcactttcctttgataaaa 406
Query: 181 cccatgagcttattataataaaaacttttaacagtaagactatttgtattttgtgttcat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 cccatgagcttattataataaaaacttttaacagtaagactatttgtattttgtgttcat 346
Query: 241 ttttcgtagagacactgattgatagtgtcagtgtcattgttaaaagtctagtgtgttcta 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttttcatagagacactgattgatagtgtcagtgtcattgttaaaagtctagtgtgttcta 286
Query: 301 atttctttttctcagtatcgttcttataaataatatccatgtaggagatttaatggtaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 atttctttttctcagtatcgttcttataaataatatccatgtaggagatttaatggtaca 226
Query: 361 ttttattattgattaatgttatcag 385
|||||||||||||||||||||||||
Sbjct: 225 ttttattattgattaatgttatcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
