BAC Information

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BAC

Clone NameMSMg01-353P03
Chromosome18 (Build37)
Map Location 49,176,861 - 49,177,009
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
Downstream geneDtwd2, Dmxl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-353P03.T7 (MSMg01no353_p03.b1)MSMg01-353P03.TJ (MSMg01no353_p03.g1)
ACCAG464697AG464698
length806788
length of high quality
(start - end)
216 (76 - 291)147 (82 - 228)
definitionCHROMAT_FILE: MSMg01no353_p03.b1 PHD_FILE: MSMg01no353_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:57 2005CHROMAT_FILE: MSMg01no353_p03.g1 PHD_FILE: MSMg01no353_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:46:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGACCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGGA
TCCGCGGAATTCCCCTACTCTGCGGGCATGGAGCCTTCACAGGGCCAAGG
GCCTTTTCTCCCATTGATGCCCAAGAAGGCTATCCTCTACTACATATACA
ACTGGAGCCATGGGTTCCTCCATGTGTACTCCTTGATTGGTGGTTTAGTC
CATGGGATCTCTTGGGTGTCTGATTGATATTGTTCTTCCTATGGGGTTTC
AAACCCCTTCTGCCTCTTCAGTCCTTTCCCTAACTCCTCCATTGTAGACA
CTGTGCTCAGTCCAATGTTTGGCTGCATGCTTCTGCCTCTGTATTTGTCA
GGCTCTGGCACAAACTCTCATCACACTGTTATATCAGGCTCTTGTCATCA
TGCTTTTTTTTGTTATCTTCATACCCCCCGCCTTTGTTGACTTGATTTCT
CTACGCATTTTTATTTTTTTAAATTTTCCGCATCACTTCTCTTTTTACCC
AAATCTTTTTCCTCTTTTCTCTCCCCATTTTTTTTTTTCCTTTATTTTCC
TCCCGTTTTTATCATTATCCTTTTTTTTTTTCCTTTTTTCTTTCACTTTT
TTTCTCCCCTTTTCTTCCGTTTTTTTTATTCTCCCCCTTTTTTATTTCTC
TTTACCCTTCGCCTTTTTTTCTACTTTTTCTCATTTACTTGACAACTAAC
TATTTTATTATCTATTACTTCTGCCCTTCTCTTATTACCGCTTCTCCGCT
TTCCCTTATTTCTCTAATACTTTCGGCCAAACTTCTCTATTCGCTTTGTT
TGTCTN
CTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGAGCAGTTAAGTAGTGA
CCATTGTTGTGTTCTCAAATTTTCATCAGACCATTTAATATTCTTATTTG
CCTCTTAGTAACACTCATCTGCTCCTTGCAGTTGAGAGCAGCTGGATTTC
CTGCGGGGACAAAAATCCCCTTAACAGGGAAGTAGCAATTCTGTCAGCTG
GTAGAACTACTATCACCACCACGGTAGTCTCTTATAATTTCCCATATATT
TTGCAATATTTTTCCAATGCTTCATCAAACATGTTATTTCCATTTCTGCT
CGTTTCTCCTTTGATTTTCCTCCTTCCCCTTTCTTTCTCACGACCTTGAT
CTTCTTTGCTTTCTTTATCCTCTACCCCTCGATTTGTTATCTCATTTTCT
CCCTTCATTTCCGCTTTTTCTTTTTCTTTCCCTCTTCCCCTCTTCTTTTT
CTGTTTCTTTTCTTCCCCCTCCCATTTCCATTTCCCGTCCTCCGCTTTTT
TTCTTTTTTCCCCCCCTTTCCCCTCTTCTTTTTCCCTTTTCCCCTACCCC
TTTTTCCCCTTTTTTTTCCCTTTTTTTTCTTCCACCTATCTTTCCCTTAT
TCCCTTTATTATCCCACCCTTTTCCCCTCCTTCTTTCTCCTTCTTTCCCC
CCTTTTTCCCCTCCTTCCCCCTTTTTTCCTTTTTTCTTTTTTTCCTCCTT
TCCCCATTCCTTTTTTCTTTTTCTTTCCCCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no353_p03.g1 MSMg01no353_p03.g1 CHROMAT_FILE:
MSMg01no353_p03.g1 PHD_FILE: MSMg01no353_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:46:58 2005
         (147 letters)



>mm_chr18_49176661_49177209
          Length = 549

 Score =  269 bits (139), Expect = 6e-77
 Identities = 146/149 (97%), Gaps = 2/149 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggagcagttaagtagtgaccattgttgtgttctcaaattttcatcagaccatttaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 aggagcagttaagtagtgaccattgttgtgttctcaaattttcatcagaccatttaatat 290

                                                                       
Query: 61  tcttatttgcctcttagtaacactcatctgctccttgcagttgagagcagctggatttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 tcttatttgcctcttagtaacactcatctgctccttgcagttgagagcagctggatttcc 230

                                        
Query: 121 tgcggggacaaaaa--tccccttaacagg 147
           || |||||||||||  |||||||||||||
Sbjct: 229 tgtggggacaaaaaaatccccttaacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 147
Length of database: 549
Length adjustment: 8
Effective length of query: 139
Effective length of database: 541
Effective search space:    75199
Effective search space used:    75199
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)