BAC Information

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BAC

Clone NameMSMg01-354A22
Chromosome18 (Build37)
Map Location 55,607,641 - 55,788,692
singlet/doubletdoublet
Overlap genenone
Upstream geneEG545257, LOC100042489, Zfp608, LOC100043089
Downstream geneLOC667401, LOC667409, LOC629043, LOC100043099, LOC629057, LOC100043104, LOC676543, LOC667432, Gramd3, LOC667458, Aldh7a1, Rnuxa, 1700065I17Rik, LOC675171
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-354A22.T7 (MSMg01no354_a22.b1)MSMg01-354A22.TJ (MSMg01no354_a22.g1)
ACCAG464781AG464782
length771816
length of high quality
(start - end)		557 (47 - 603)412 (77 - 488)
definitionCHROMAT_FILE: MSMg01no354_a22.b1 PHD_FILE: MSMg01no354_a22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:06 2005CHROMAT_FILE: MSMg01no354_a22.g1 PHD_FILE: MSMg01no354_a22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:47:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,788,140 - 55,788,692)(55,607,641 - 55,608,052)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTACCCTCCAAACAGAAAAATGATAAGAAATAAATTAAAAACAA
ATTTCAAAAGGCAAATTAATAAAAAATACATTATTATTAAAATTTTTAAT
CTTGGAGATGTTGAGGGCTCTTGAGTGATTCTAGTTTACATTTAAAATGG
CTATGCCTCTTTTCCTTTGTTTTTAATTAAGAAGAAAAAAAACCTGGCCA
ACAAGTTTCACAGGAACATTATAAAATTTGAACACTTGTAGGTTGGTGTT
ATCAGTACAAATGGTGCAGACACTTTGATAGTTCGTTTTCCATCACCATG
AGCTAATGATGAGACTGGGAAACTATAAAAATAAGAGGCTTACTTAGCTC
ACATTTTGGGAGACTGAAAATCCACACAGGATGCAGTGTCAGCTCTGGTG
TGTGGACCACAGCACCTCACTGGGACAGTGCCACCGTCATGGCAGGAGTA
TGTGCAAGACGACATCACATGATCAGACGAAAATCCAATGGAGGAGGGCA
GTAGCCAGGCTTCTCTTTTATGTCCACACTTGCATAAGAACTACTTCGTG
GTCACAGAAGAGAAACTTTTCTTATTCTCTTTTGAAGTGATAACTAGAAA
AACTCTGGCTTTCTCACGAAGCTGGACTTCTTTCTTTTTTTTAATTGAAA
ATTTATTTATTTACATTTCAANTGGTATCCCCCTTTCCAAATTTCCCCTG
GCAAAAATTCTATCCCATTTG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTCAGGAGTAGGTTTAGCTCAGTT
GGTAGAGTGCTTGTGTGTCATGCATGAAGCCCTGGGTTTGATCCCCAGTA
CCACATATTCTAGGTATTATGAGCCATACATACTAGGAGCAGGAGGCACA
GTAGTTCAAGACTATTGTCAGCTCTAGCCTGGGATATATGACCACCCTTT
AAGAAAGAGTGTCCAGGGCTAGGGGTGGAGTGGGAGGATGGCCCCATTTA
ATTTATAAACACTGAAAATGAACTGTGTAGGACATAATAAGAGAGTAACA
CCTGTGACTAATTTATATTCTCCAGGTTCATGGCTTTAATGACAGTGACT
GTTAAAAATATCCCCCTTCTTGGTTGTATTACAGGCTGTTTGTAGAGACA
AAGTTCTCTTTAACTTAATTTGTATGAAAGATCTCACTCTTCATACTAAA
AATAAAGACTTTTAAAGAAAATGTGACTTTTGACAGTACAAGCAACTAAA
TGGAGCATTGTGGTGAGCCTATTCCTTTTTGACAGCTTGACTGCTTTTCA
AACCCCCCCCCAGAACTTTTCCCCCTAGGATGGGCTTTTTCCCCAAAAAG
GAATAAAAATGTTTATTTCTTGTTTGCCAAAATTTTTTTTTTTTCCGATA
GATTTCTTGGTTTTCTTCTGGTGTAAAAAAAATTCCCGGTGCTTTTGGTA
AATGGTCTGTTGGTATAATTTTTTCCCCCTCTTCTCGCGGTTATATAAAT
GTCTTGTTTTACTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no354_a22.b1 MSMg01no354_a22.b1 CHROMAT_FILE:
MSMg01no354_a22.b1 PHD_FILE: MSMg01no354_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:06 2005
         (557 letters)



>mm_chr18_55787836_55788792
          Length = 957

 Score = 1069 bits (553), Expect = 0.0
 Identities = 553/553 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttaccctccaaacagaaaaatgataagaaataaattaaaaacaaatttcaaaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gaattcttaccctccaaacagaaaaatgataagaaataaattaaaaacaaatttcaaaag 798

                                                                       
Query: 65  gcaaattaataaaaaatacattattattaaaatttttaatcttggagatgttgagggctc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gcaaattaataaaaaatacattattattaaaatttttaatcttggagatgttgagggctc 738

                                                                       
Query: 125 ttgagtgattctagtttacatttaaaatggctatgcctcttttcctttgtttttaattaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttgagtgattctagtttacatttaaaatggctatgcctcttttcctttgtttttaattaa 678

                                                                       
Query: 185 gaagaaaaaaaacctggccaacaagtttcacaggaacattataaaatttgaacacttgta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gaagaaaaaaaacctggccaacaagtttcacaggaacattataaaatttgaacacttgta 618

                                                                       
Query: 245 ggttggtgttatcagtacaaatggtgcagacactttgatagttcgttttccatcaccatg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggttggtgttatcagtacaaatggtgcagacactttgatagttcgttttccatcaccatg 558

                                                                       
Query: 305 agctaatgatgagactgggaaactataaaaataagaggcttacttagctcacattttggg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agctaatgatgagactgggaaactataaaaataagaggcttacttagctcacattttggg 498

                                                                       
Query: 365 agactgaaaatccacacaggatgcagtgtcagctctggtgtgtggaccacagcacctcac 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agactgaaaatccacacaggatgcagtgtcagctctggtgtgtggaccacagcacctcac 438

                                                                       
Query: 425 tgggacagtgccaccgtcatggcaggagtatgtgcaagacgacatcacatgatcagacga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tgggacagtgccaccgtcatggcaggagtatgtgcaagacgacatcacatgatcagacga 378

                                                                       
Query: 485 aaatccaatggaggagggcagtagccaggcttctcttttatgtccacacttgcataagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aaatccaatggaggagggcagtagccaggcttctcttttatgtccacacttgcataagaa 318

                        
Query: 545 ctacttcgtggtc 557
           |||||||||||||
Sbjct: 317 ctacttcgtggtc 305


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space:   518009
Effective search space used:   518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no354_a22.g1 MSMg01no354_a22.g1 CHROMAT_FILE:
MSMg01no354_a22.g1 PHD_FILE: MSMg01no354_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:47:06 2005
         (412 letters)



>mm_chr18_55607441_55608252
          Length = 812

 Score =  766 bits (396), Expect = 0.0
 Identities = 408/412 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctcaggagtaggtttagctcagttggtagagtgcttgtgtgtcatgcatgaagccctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 ctcaggagtaggtttagctcagttggtagagtgcttgtgtgtcatgcataaagccctggg 260

                                                                       
Query: 61  tttgatccccagtaccacatattctaggtattatgagccatacatactaggagcaggagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttgatccccagtaccacatattctaggtattatgagccatacatactaggagcaggagg 320

                                                                       
Query: 121 cacagtagttcaagactattgtcagctctagcctgggatatatgaccaccctttaagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacagtagttcaagactattgtcagctctagcctgggatatatgaccaccctttaagaaa 380

                                                                       
Query: 181 gagtgtccagggctaggggtggagtgggaggatggccccatttaatttataaacactgaa 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgtccagggctgggggtggagtgggaggatggccccatttaatttataaacactgaa 440

                                                                       
Query: 241 aatgaactgtgtaggacataataagagagtaacacctgtgactaatttatattctccagg 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 aatgaactgtgtaggacataataagagagtaacacccgtgactaatttatattctccagg 500

                                                                       
Query: 301 ttcatggctttaatgacagtgactgttaaaaatatcccccttcttggttgtattacaggc 360
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 501 ttcatggctttaatgacagtgactgttaaaaatattccccttcttggttgtattacaggc 560

                                                               
Query: 361 tgtttgtagagacaaagttctctttaacttaatttgtatgaaagatctcact 412
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtttgtagagacaaagttctctttaacttaatttgtatgaaagatctcact 612


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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