Query= MSMg01no355_i02.b1 MSMg01no355_i02.b1 CHROMAT_FILE:
MSMg01no355_i02.b1 PHD_FILE: MSMg01no355_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:58 2005
(604 letters)
>mm_chr18_15747004_15748007
Length = 1004
Score = 1036 bits (536), Expect = 0.0
Identities = 584/600 (97%), Gaps = 1/600 (0%)
Strand = Plus / Minus
Query: 5 gaattctaaacagagtaatcgggatgacttttcttaaaactctcagacttggaagagact 64
||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 835 gaattctaaacagaggaat-gggatgatttttcttaaaactctcagacttggaagagact 777
Query: 65 tttaaaaaagaagcagggaagaagataccatttagaaagctgttaaagtaacccattaga 124
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tttaaaaaagaagtagggaagaagataccatttagaaagctgttaaagtaacccattaga 717
Query: 125 aaatgaaatggtctggaccaaagggagttcagtagaaatagtgagatgctatcaaagtta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 aaatgaaatggtctggaccaaagggagttcagtagaaatagtgagatgctatcaaagtta 657
Query: 185 gaatagatttttgaagtagcaatggttcctaccagggacagtttagggaagagtgacaaa 244
||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||||
Sbjct: 656 gaatagatttttggagtagcagtagttcagaccagggacagtttagggaagagtgacaaa 597
Query: 245 ggcttggacaagtcaggcagtgttgctattagctgaggtgtacttggacataagaggacc 304
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 596 ggcttggacaagtcaggcagtgttgctattagctgaggtgcacttggacataagaagacc 537
Query: 305 aacatgactgaggagggctgtgactggggctagaaggaactttctgtttgtacattttga 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 aacatgactgaggagggctgtgactggggctagaaggaactttctgtttgtacattttga 477
Query: 365 atttgaaatgactattacctagcaagcaaataaaaatttttcagtattactgaaatcatc 424
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 476 atttgaaatgactattacctagcaagcaaataagaatttttcagtattactgaaatcatc 417
Query: 425 tagaccaattgtcctcaaccttcataatgctgggaccctttaaaaccattccccatgagg 484
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tacaccaattgtcctcaaccttcataatgctgggaccctttaaaaccattccccatgagg 357
Query: 485 tggtaacctctccacatcaaattatcttcattgctacttgtaattgtaattttgctactt 544
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct: 356 tggtaacctctccacatcaaatcatcttcattgctatttgtaattgtaattttgctactt 297
Query: 545 ttatgaaccatattgtaaatgtctggtgtgcatcacaggttgagagccactgaactaggc 604
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 296 ttatgaaccatattgtaaatgtctggtgtgcatcacaggttgagagccactaaactaggc 237
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space: 590436
Effective search space used: 590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no355_i02.g1 MSMg01no355_i02.g1 CHROMAT_FILE:
MSMg01no355_i02.g1 PHD_FILE: MSMg01no355_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:48:58 2005
(506 letters)
>mm_chr18_15571684_15572586
Length = 903
Score = 948 bits (490), Expect = 0.0
Identities = 501/506 (99%), Gaps = 3/506 (0%)
Strand = Plus / Plus
Query: 1 caggcaatgcagtgttattctaattccttattctggaaaccaggaaagctgcctacataa 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 caggcaatgcagtgttattctaatcccttattctggaaaccaggaaagctgcctacataa 260
Query: 61 tgcatctctcaaattgaagtagtcttaaacctgcctccttactgatcttacccataatac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatctctcaaattgaagtagtcttaaacctgcctccttactgatcttacccataatac 320
Query: 121 tatgccctctagaaatcccttgttttcctcccttttacctttactctccaggtttagtct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgccctctagaaatcccttgttttcctcccttttacctttactctccaggtttagtct 380
Query: 181 ctgcttatttggctacttcttcttagtcttctttggtcctattattatttattcagtgac 240
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 cttcttatttggctacttcttcttagtcttctttggtcctattatt---tattcagtgac 437
Query: 241 cagtgagatagtttgctgttaagagcattttttgctgtagaagacccaggttgcttccta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 cagtgagatagtttgctgttaagagcattttttgctgtagaagacccaggttgcttccta 497
Query: 301 gtaggcatatgtggctcacaaccatccatcagccatttgggggaatccagttttctgcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtaggcatatgtggctcacaaccatccatcagccatttgggggaatccagttttctgcaa 557
Query: 361 gtaccaggcacacatgcggtgcccataaaaatctgcaggtaaaacattcatgcacataaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 gtaccaggcacacatgcggtgcccataaaaatctgcaggtaaaacattcatgcacataaa 617
Query: 421 atattttctaaatctaagcaagttaaaaagggatgtttcataactcaaaacttttgagtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atattttctaaatctaagcaagttaaaaagggatgtttcataactcaaaacttttgagtg 677
Query: 481 tttaagatcatttagctggcatgtgt 506
||||||||||||||||||||||||||
Sbjct: 678 tttaagatcatttagctggcatgtgt 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 903
Length adjustment: 10
Effective length of query: 496
Effective length of database: 893
Effective search space: 442928
Effective search space used: 442928
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
