BAC Information

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BAC

Clone NameMSMg01-356O01
Chromosome18 (Build37)
Map Location 47,750,139 - 47,750,527
singlet/doubletsinglet
Overlap geneA730092B10
Upstream geneEif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik
Downstream geneLOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326, LOC100042323
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-356O01.T7 (MSMg01no356_o01.b1)MSMg01-356O01.TJ (MSMg01no356_o01.g1)
ACCAG466915AG466916
length752739
length of high quality
(start - end)
344 (68 - 411)389 (71 - 459)
definitionCHROMAT_FILE: MSMg01no356_o01.b1 PHD_FILE: MSMg01no356_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:44 2005CHROMAT_FILE: MSMg01no356_o01.g1 PHD_FILE: MSMg01no356_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:50:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAACGGATGCGCGGAA
TTCAAAGGAATAGCTGTCTACTAGATAAGCAGAGTAGAACAATCAAGTCC
GTGGATCGAAGAACACTTAAGTGGAGATAGGCTTCAAAGGTAGCCTGATA
TAGAGGGTATTTAAAGCTAAGAGAGTGGAAACGTTACAAAGGTGGTGAGG
GTAGATGGAGAAGACATTCCAGGCCTGTCTCGGGGGCACTGCAACACTAG
GAAGCACGGGAGCAGATGAGGAGTGAGGGAAGGATCCAGAAGCACCAAGA
AGACTGCAGGGACATTCGTGGTTCTCTGGAAAGAAAGTGTACGGATGAGA
AGGGTGTTAACCGCATCATAGGTTGCTCATGAGGAAACAGAACTGAAAAT
TAGATTCAGTGCTGACATGGCTCAAGGCCACTTTCATTATTAACAACAGT
CTTGTCGGGCTGGAGAGACGCCTCAGTGGTTAAGAGCACTGACTGCTCTT
GCAAAGCCCTCTGAGCCCCTCCTCTATGTTCCTCTTGGTGCCTTCTACTC
CTCTGTATTGAGCCCTGATGCTCTGCTCGTTGTGTGTCTTAATACAGTTG
CCGGGCCCTTCTTCTTTTTCTCCGTGCGCCACGTCAGCATATTTTCCTTC
CCTCCTCGCTTACCCTTTCTTTTTCTCTTCTGATGTCCGCTTATTTGATT
CCCCTTTTTTTCTCTCATTCTTTTACTATGTCCCCACGTCTTATTCTTTT
TT
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXATTCCACACCATTACACATCCTTTGCCTGA
AGAATGAATAGTCTTCCAGAATTAAAACTGACAAACTTTCAGGGGGGAAA
CACTTGGTACAGATCTACTCAGCACCTTTGTCCTATGGTTTATTTTTACC
AATATTAGAGCACACTACTTGTAAGAATTTAACAGTGTCAGCCACTCCTC
CTGCATACATATTGTGGCCTTTTTGACCGGTGTGATGCATAGTACTGGGT
AAGCCAAAATCTAGCTGAACAAAACAATCAACAGACACAGAGTTAGGGGA
CGCTAAGTAAAACACAAACCGCACCAGAAAGTCGGAGGGGGAGATAAACA
TCATAGAGAACCCACGCTTCTGAAGACGTATAAGGATTCAAGCAACAACA
TGTCCATGAGAGCTAGGCATGGTGGGTCAGTCCTTTAATCCTGTTCCTTG
AAGAAAGAAAGTATGCTGATCTCTGTAAACTAGACTGACCTACATGATTC
TAATCCCGCTCAGATTATGCTGCGAGACCCTGTCCCTCTCTTCCCTTTTA
TCGTAAACTGTTGTCCCCTCTACGCATATGATTTCTGTCCTTAACTTTGT
AGCCTACCCTTATCTGCTTCTGCCTTTTCCCATTCACCCCTTTTGCCCTG
AAGCTCTCTCCAATTTCGTCCCCCGCCTGTTTTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no356_o01.g1 MSMg01no356_o01.g1 CHROMAT_FILE:
MSMg01no356_o01.g1 PHD_FILE: MSMg01no356_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:50:44 2005
         (389 letters)



>mm_chr18_47749939_47750727
          Length = 789

 Score =  729 bits (377), Expect = 0.0
 Identities = 386/389 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attccacaccattacacatcctttgcctgaagaatgaatagtcttccagaattaaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 attccacaccattacacatcctttgcctgaagaatgaatagtcttccagaattaaaactg 530

                                                                       
Query: 61  acaaactttcaggggggaaacacttggtacagatctactcagcacctttgtcctatggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 acaaactttcaggggggaaacacttggtacagatctactcagcacctttgtcctatggtt 470

                                                                       
Query: 121 tatttttaccaatattagagcacactacttgtaagaatttaacagtgtcagccactcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 tatttttaccaatattagagcacactacttgtaagaatttaacagtgtcagccactcctc 410

                                                                       
Query: 181 ctgcatacatattgtggcctttttgaccggtgtgatgcatagtactgggtaagccaaaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctgcatacatattgtggcctttttgaccggtgtgatgcatagtactgggtaagccaaaat 350

                                                                       
Query: 241 ctagctgaacaaaacaatcaacagacacagagttaggggacgctaagtaaaacacaaacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctagctgaacaaaacaatcaacagacacagagttaggggacgctaagtaaaacacaaacc 290

                                                                       
Query: 301 gcaccagaaagtcggagggggagataaacatcatagagaacccacgcttctgaagacgta 360
           ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct: 289 gcaccagaaagtcggagggggagataaacatcaaagagaacccacacttctgaagacgta 230

                                        
Query: 361 taaggattcaagcaacaacatgtccatga 389
            ||||||||||||||||||||||||||||
Sbjct: 229 caaggattcaagcaacaacatgtccatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)