BAC Information

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BAC

Clone NameMSMg01-357O10
Chromosome18 (Build37)
Map Location 44,776,294 - 44,776,650
singlet/doubletsinglet
Overlap genenone
Upstream geneJakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc
Downstream geneLOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-357O10.T7 (MSMg01no357_o10.b1)MSMg01-357O10.TJ (MSMg01no357_o10.g1)
ACCAG467687AG467688
length781761
length of high quality
(start - end)
70 (125 - 194)359 (81 - 439)
definitionCHROMAT_FILE: MSMg01no357_o10.b1 PHD_FILE: MSMg01no357_o10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:01 2005CHROMAT_FILE: MSMg01no357_o10.g1 PHD_FILE: MSMg01no357_o10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAATTCTTGATTTGATAAATTTGTGCCTGCTATCATTAAAACTCTGGGC
TCAGTGTTAGATGTCCTGATATTCCAAGTACTAATTCTCCAGCAAGGATT
CATCTACTCCCTGGATCTTTTATGTTCCTTATGTCCAGAAGTCATCAGTC
AAGAAGAGTCATCCTGGCTGAGTAAGTGAGCCTGCTTATGAAGAGGAATG
GAGCTCCAGTCAGGAGCAAATCCAGTCAGGGAGGAGCACATTTATAGTGC
AGGTGACTGATGTGGTGAACTCCTGGCATCCTCTCATCCAGTTCTAAGAG
TATATGAGCATGTGCAGTAACCCCAGCCTTGGCAGACATGAGCACCTGGG
TTGTGTCTATTGGCAAGTAGTCCTAGTCTCGCCTCTGATAGTGATGTCAG
TCTAGACTCATGTATCCCTCTTCACCTCTTGACCCTTGATCCCGTGTTAA
TGACTATAATTCTTCTCCCCCTAAATTTTTCCTTTTAATATTCTCTTATC
CTCGTTTTCTCATTTTCTGCCTTGCCCCTTCTACCTTTCTTTCTCTTTTA
TCCTTACATTTTTTCCGCCTTTACCGCCATTTTCTCTCTCTCTTTTTCTC
TTTTTGTTGTTTTCCCTTTTATTTCCCTTTCCCCCCCCTACTCCTATATA
TCTATTGCCTTACACGTATTGTATCTCTTCTTCCCCACCCTTCCCTTTCC
CTACCATTCTCTTCATTTACCCTCACTCTCC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGACCAGCCATGGCCACATAGCAAAATG
CCAACAACTGGGAACCAAGTGTTGAAAACACAGGAGCCCATGAAGAACAT
TTCCTACTCAAACTCCAACAGACAGCTTGATATGTTTTACGGGGAGACAT
CTCTGACCAGGATTACAAAAAGAACTTCTGGTTGTAACTAAACCAGCCAA
GAGGCTATCGCTCACTGGTATTATCTGGGCCATGTGGGAAAGATATGGTA
CAGCCCTTTTATATAGACAGCAGCTACCCGGGGCTCATCCAGTTAACACA
TCTAGGAACATTCAGGTGTGTTGCTACACTATCCAACTTCTTGAGAGGAG
CCATGAATGCAGCTTCAAAGGCGAATGATTTTCTTTTTAAAACAAATGTT
TAAGCTCTTTTTGGAGGGACTTCAATTTATTTATCCTTACTTACTGTATA
CGCGCCTTTTTGCCTCGTCGCACGTTTATGCTCCATACGTGTGCTGTACC
TTCTTAACGCTCAATATCTTCTTTTTATTTGTTCTAATTTTATTCTTCTC
TCTCTGCTCGTCATCTCCTCTTCCTCTCGTTCTACCTTATCTTTTATTTC
TTTACCACTTACTCTTTCTCTTTAGCCGCTCACGTTTCCCTATTTTTTGT
CCCTTCACTTCTTCTTTTCCTTCGCTTTCTCTATTATCCCCTTTGTTTAC
CTTATTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no357_o10.g1 MSMg01no357_o10.g1 CHROMAT_FILE:
MSMg01no357_o10.g1 PHD_FILE: MSMg01no357_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:01 2005
         (359 letters)



>mm_chr18_44776095_44776853
          Length = 759

 Score =  623 bits (322), Expect = 0.0
 Identities = 349/358 (97%), Gaps = 3/358 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   catggccacatagcaaaatgccaacaactgggaaccaagtgttg-aaaacacaggagccc 59
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 200 catggccacatagcaaaatgccaacaactgggaaccaagtgttggaaaacacaggagccc 259

                                                                       
Query: 60  atgaagaacatttcctactcaaactccaacagacagcttgatatgttttacggggagaca 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atgaagaacatttcctactcaaactccaacagacagcttgatatgttttacggggagaca 319

                                                                       
Query: 120 tctctgacca-ggattacaaaaagaacttctggttgtaactaaaccagccaagaggctat 178
           ||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tctgtgaccatgg-ttacaaaaagaacttctggttgtaactaaaccagccaagaggctat 378

                                                                       
Query: 179 cgctcactggtattatctgggccatgtgggaaagatatggtacagcccttttatatagac 238
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 379 cgctcactggtattatctgggccatgtgggaaagatatggtacagcccttctatatagac 438

                                                                       
Query: 239 agcagctacccggggctcatccagttaacacatctaggaacattcaggtgtgttgctaca 298
           |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 439 agcagctacccggggctcatccagttaacacatctaggaacactcaggtatgttgctaca 498

                                                                     
Query: 299 ctatccaacttcttgagaggagccatgaatgcagcttcaaaggcgaatgattttcttt 356
           ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 499 ctatccaacttcttgagaggagccatgaatgcaccttcaaaggggaatgattttcttt 556


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 359
Length of database: 759
Length adjustment: 9
Effective length of query: 350
Effective length of database: 750
Effective search space:   262500
Effective search space used:   262500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)