Query= MSMg01no358_c12.b1 MSMg01no358_c12.b1 CHROMAT_FILE:
MSMg01no358_c12.b1 PHD_FILE: MSMg01no358_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:21 2005
(647 letters)
>mm_chr18_58567334_58568377
Length = 1044
Score = 1040 bits (538), Expect = 0.0
Identities = 610/644 (94%), Gaps = 19/644 (2%)
Strand = Plus / Plus
Query: 7 gaattcaataactggatcatgttcaagttcccctgagaaggtcttttgcctccattgtcc 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcaataactggatcatgttcaagttcccctgagaaggtcttttgcctccattgtcc 266
Query: 67 ccttcgctctcgaattcagatccttttcgtggttcgtgactgtgaacggcaggaaccaga 126
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 267 ccttcactctcgaattcagatccttttcgtggttcgtgactgtgaacggcaggaactaga 326
Query: 127 ttccacgccaggaagtgatagcacatgccagggtcacactgaggtagtttgcatgctatg 186
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 327 ttccatgccaggaagtgatagcacatgccagggtcacactgatgtagtttgcatgctatg 386
Query: 187 gtgctccttcctcatcatctttgtaactggagacagagctgcacacaaccctggcactgg 246
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 387 gtgctccttcctcatcatctttgtaactggagacaga--tgcacacaaccctggcactgg 444
Query: 247 agagaacactgcctcgtcccgttagacatccctcaggtatccatctgtgcagacag---g 303
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct: 445 agagaacactgcctcgtcctgttagacatccctcaggtatccatctgtgcagacagaagg 504
Query: 304 ttttcttccttccaagaacaagcaagccacatttagtcacagcatagaccctttgacaga 363
||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttcttcc----aagagcaagcaagccacatttagtcacagcatagaccctttgacaga 560
Query: 364 gctagggtaggacagtgtggcacagtaggcagcttgcttcttggtgatcaaccgattgag 423
|| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 561 gccagggcaggacagtgtggcatagtaggcagcttgcttcttggtgaccaaccgattgag 620
Query: 424 gcaacacctgacattccttgacattccttgacatttctggagttcactgaggccagactg 483
| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 ggaacacctgacattccttgacatt----------tctggagttcactgaggccagactg 670
Query: 484 ggtcagagagcaagccaagtagtgctcacagtgttcaaacacccacagactcatctctag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 671 ggtcagagagcaagccaagtagtgctcacagtgttcaaacacccacagactcatccctag 730
Query: 544 tttactctatttctagttgtccccaagttcactttaccccaatgacctaaaaagaatgca 603
||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 731 tttgctctatttctagctgtccccaagttctctttaccccaatgacctaaaaagaatgca 790
Query: 604 atgctgttctcgttttggttttattaaaatttgaccaacatcca 647
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791 atgctgttctcgttttggttttattaaaatttgaccaacatcca 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1044
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1034
Effective search space: 658658
Effective search space used: 658658
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no358_c12.g1 MSMg01no358_c12.g1 CHROMAT_FILE:
MSMg01no358_c12.g1 PHD_FILE: MSMg01no358_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:21 2005
(483 letters)
>mm_chr18_58693765_58694647
Length = 883
Score = 658 bits (340), Expect = 0.0
Identities = 390/422 (92%), Gaps = 29/422 (6%)
Strand = Plus / Minus
Query: 1 ttcccattatcctttcccccaaagccagaggctggagcctaactcttgtttttattaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttcccattatcctttcccccaaagccagaggctggagcctaactcttgtttttattaaca 334
Query: 61 tgtttattacatatcgaccatatccttgcatattttcatacatgcacacagcctgaatct 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 333 tgtttattacatatcgaccatatccttgcatattttcatacatgcacacagccttcatct 274
Query: 121 cttctgctttgttcttcctattccacatactcttactggttctagtaattactattgaat 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 273 cttctgctttgttcttcctattccacatactcttactgattctagtaattactattgaat 214
Query: 181 tttcaggtcaacatctttctttcttccttccttcctttctttctttctctctctctctct 240
||||||||||||||||||||||||||||||||||| |||
Sbjct: 213 tttcaggtcaacatctttctttcttccttccttcc---------ttc------------- 176
Query: 241 ctctctctctctctctctctctctctctctctctctctctctctctttctttctttcttt 300
|| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 175 ct-tc-ctctctctctctctctctctctctctctctctctctctc--tctttctttcttt 120
Query: 301 ctttcaacactactccgaattttattcccctcctagtccaccttcaaactgttccacatc 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 ctttcaac---actccgaattttattcccctcctagtccaccttcaaactgttccacatc 63
Query: 361 ccatacctcctccctgcccccctgtctccaggaaaatacccccaccctctcccctatccc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ccatacctcctccctgcccccctgtctccaggaaaatacccccaccctctcccctatccc 3
Query: 421 at 422
||
Sbjct: 2 at 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 25
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space: 412929
Effective search space used: 412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
