BAC Information

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BAC

Clone NameMSMg01-358F02
Chromosome18 (Build37)
Map Location 50,201,838 - 50,202,366
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1
Downstream geneTnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a, LOC100042373, LOC100042385
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358F02.T7 (MSMg01no358_f02.b1)MSMg01-358F02.TJ (MSMg01no358_f02.g1)
ACCAG468003AG468004
length731731
length of high quality
(start - end)
532 (34 - 565)372 (63 - 434)
definitionCHROMAT_FILE: MSMg01no358_f02.b1 PHD_FILE: MSMg01no358_f02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:33 2005CHROMAT_FILE: MSMg01no358_f02.g1 PHD_FILE: MSMg01no358_f02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATCTG
GGATTTATTAGTGTGTGCGTGTTGGTGGCATAGCCGGATGTTAGTTCTTA
ACTTAAGGAAACAAAGTTTTCAACGTGACGATGGCGACTTTTTGCTCTGT
CAAGTGGTAGCAGCTGCCGATACCTTCCTGGTTCTGGAAACTCCATCAGC
TGAAGTGGAGTGTTGCTCAATCTGTCGTACTAAAGGGTCTGGATGCCAAT
GGTAGTGGGCTGTGTAGTTGATGAGGGAGCTAGTTAGGTGCCTCCTTATG
GGGAAGCACAGCCCGTTTGTTGACGAGAACATCTTCTGGGAAGGTTGCAT
GTACCCCCACACTCTGTTTATGGGGATGATAAAGCAAGTACGATCACTCG
GCACACGCTGTAAAACAGAAGGCTTGCAGCTGGCAGAGTTGCGTTCCTCT
TGGCTCCTTTTCTGAAGGAATTTTTGGAAACTTGTTAGATTTATGAATAG
TTGCAGATTACCAGCCTTGTTCTCCAGTGCAAGCGAATGCTCCTTTAAAC
TTTGTTTTTTTCTTTGAAGATAGCAGATTTGGTTTTTTTTTTTTTTGATG
GTTTCATAATATACTTTTATGGGTTGGAGGAAATACTAGTTTATTCTTAT
CTGTTGGCCTAACTCATGTATAAATTAAAAGTTTTAACCGACTATTTTCA
TTGGTTTACATTAGCCTCTTTTTTACTGCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTTCTCTCCCTCTTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTTCTCCTCCTCCTTCCACTATTCCTATTATTTGT
AGGTTTGGTCCTTTCATAGTGTCTCAGATTTTCAGGATGTTTCATGTCAG
GAATTTTTTAGATTTAACATTTTTGTTGATCGATATATCCATTTCTTCTA
TCATGCCTGAGATTCTCTCTTCCGTCTCTCATATTTTGTTGGTGAAGCTT
ATGCCTGTCGTTTCTGTTCACATTACTAAATTTTTCATTTTTCCAGAATT
CACTCTGCTTTGTTTTCTTTATTGTTTCTATTTCTATTTTCTGGTCTTGG
GCAGTTTTATTTGTTTCCTTGAATTGTTTGTTTGCTTGTTTGATCCTGCC
TTTCTTTAGAGGATTTATTCATTTCCTCCAATTCTTCGTATTTTCTTAAC
TTTCTTTGGCGAACTTATTCTTTTCTTTTTTAAGGACCACTACCATCTTA
ATATTTACTTGTTAGATTTTTTTCTTGTGCCTTTTTTTTACTTGTTTTAC
TCTTTTGCCTGATATGGGTAGGATATTTTTACCTCTCGGGGAAAACATAA
TCCCCCTGTGCAGATTTTTTGGACTGTTTTTCTTATGTTCAACTTATCCC
TGGAACCTTTTTCAACGTTCTACCCCTGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_f02.b1 MSMg01no358_f02.b1 CHROMAT_FILE:
MSMg01no358_f02.b1 PHD_FILE: MSMg01no358_f02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:33 2005
         (532 letters)



>mm_chr18_50201635_50202566
          Length = 932

 Score =  986 bits (510), Expect = 0.0
 Identities = 525/530 (99%), Gaps = 2/530 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcccatctgggatttattagtgtgtgcgtgttggtggcatagccggatgttagtt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcccatctgggatttattagtgtgtgcgtgttggtggcatagccggatgttagtt 263

                                                                       
Query: 64  cttaacttaaggaaacaaagttttcaacgtgacgatggcgactttttgctctgtcaagtg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttaacttaaggaaacaaagttttcaacgtgacgatggcgactttttgctctgtcaagtg 323

                                                                       
Query: 124 gtagcagctgccgataccttcctggttctggaaactccatcagctgaagtggagtgttgc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gtagcagctgccgataccttcctggttctggaaactccatcagctgaagtggagtgttgc 383

                                                                       
Query: 184 tcaatctgtcgtactaaagggtctggatgccaatggtagtgggctgtgtagttgatgagg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tcaatctgtcgtactaaagggtctggatgccaatggtagtgggctgtgtagttgatgagg 443

                                                                       
Query: 244 gagctagttaggtgcctccttatggggaagcacagcccgtttgttgacgagaacatcttc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 444 gagctagttaggtgcctccttatggggaagcacagcccgtttgttgactcgaacatcttc 503

                                                                       
Query: 304 tgggaaggttgcatgtacccccacactctgtttatggggatgataaagcaagtacgatc- 362
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || 
Sbjct: 504 tgggaaggttgcatgtacccccacactctgtttatggggatgataaagcaagtacg-tcc 562

                                                                       
Query: 363 actcggcacacgctgtaaaacagaaggcttgcagctggcagagttgcgttcctcttggct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 actcggcacacgctgtaaaacagaaggcttgcagctggcagagttgcgttcctcttggct 622

                                                                       
Query: 423 ccttttctgaaggaatttttggaaacttgttagatttatgaatagttgcagattaccagc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ccttttctgaaggaatttttggaaacttgttagatttatgaatagttgcagattaccagc 682

                                                             
Query: 483 cttgttctccagtgcaagcgaatgctcctttaaactttgtttttttcttt 532
           |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cttggtctccagtgcaagcgaatgctcctttaaactttgtttttttcttt 732


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)