BAC Information

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BAC

Clone NameMSMg01-358F13
Chromosome18 (Build37)
Map Location 64,060,786 - 64,119,967
singlet/doubletdoublet
Overlap geneWdr7
Upstream geneApcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1
Downstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358F13.T7 (MSMg01no358_f13.b1)MSMg01-358F13.TJ (MSMg01no358_f13.g1)
ACCAG468023AG468024
length724720
length of high quality
(start - end)		552 (36 - 587)515 (67 - 581)
definitionCHROMAT_FILE: MSMg01no358_f13.b1 PHD_FILE: MSMg01no358_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:35 2005CHROMAT_FILE: MSMg01no358_f13.g1 PHD_FILE: MSMg01no358_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,060,786 - 64,061,334)(64,119,457 - 64,119,967)
sequence
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTCT
ATAGAGCTGCCACCGTCTCTACCACTCACCTAGCTTACATGTGGGAAAAA
CTAAGCCGCCCATCGGTTGACCCTGACCGTGGCTCCATGCTGTAAAATGC
AATGCAGAATTTCAGTCTGTACTGAGTTGAGGGAGAGCACCTTGGTGTGT
CCAGAGCCAGTAGCCAGGAGTAGGGCTTAGTGTTTGTGAATCAGAGAGAG
CAAGCTGAGCAAGCCAGTAAGTAACAAGCCAGTAAAGAACATCCCTCCAT
GGCCTCTGCATCAGCTCCTACTTCCTGACCTGCTTGAGTTCCAGTCCTGA
CTTTCTTTGCTGATGAACAGCAATGTGGAAGTATAAGCTGAATAAACCCT
TCAACTTGCTTCTTGATCGTGATGTTTTGTGCAGGAATAGAAACTCTGAC
TAAGACAGTGCATAAATAATTAACCCACAGCCATGACTGCTTTGTCATTG
TGACACAGAATTGGTCACTCTGTCTGTGTATGCAATGTTCAAAGGGAAAG
GCTATGGGATCCAGCACATTAATTTTTTTTATTTTTAAGTTTTCTCTTTA
GCAAAAGTATTGGTTTCGTGTGGCACTTCCAGCCATTTTCATGNTTTGNT
GNTGNNTGTGNTGNTGNTGNTGNTGNTCANCCTGGTCATTTCTTTTCTTG
GGCTGCTGAATCCCTCTGGCCGCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTACGTAGACCAGGCTGCCTTTGAACTCAGAGC
TTTGCCTGCCTCTGGTGGGATTAAATGTCTGGGCAACCACATCTAGCCCA
AAGTGCTTTTTTGTTTTGTTTTGTTTATCTAAATAAAAAAGAGCTACTAG
GTAGGAACTTCAGCAGACCTTTGATTTCTGGATGCCAAGTCCTTGGGTGT
CAGATATGCTTCCTCAAGCCCATCAGAATTTACATAAGCAGTCTGGCTAT
TCTCGAATAACTCAGCAGGCTTCCCCACTACTTAGGAGGTCAACTGATTA
GTCTACCAGGAGAGTTGCTCTTCACCCACGCCCAGTGACTTTGCTTCCTT
CAACTTATTTCACATGTGCCACAGACACACCACATTAACTGATTAATGTG
TTAATAAAAAAACCCAAGATGTTAAATATTGGAAAAATGTGTTTATAACA
AAAGTTTGAAGATATGAATTGTCCTAAGACGAAGCCATAATAAGAAACTT
AAGTGTGAGTGTGGTGCCTGCTCTCCCGATGGTTCTTGTGCCTCTCAGGA
GATCTCTGGACGCCATTTAGAACCAGAGTTCTGGTATTTTCACTTTAACT
ACCACTCTCTTGTGTCACAGTGAGCCATTTCAAATGAGAGCAATAATTAA
TGCCTGTAGCTTTGAACTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_f13.b1 MSMg01no358_f13.b1 CHROMAT_FILE:
MSMg01no358_f13.b1 PHD_FILE: MSMg01no358_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:35 2005
         (552 letters)



>mm_chr18_64060583_64061534
          Length = 952

 Score = 1046 bits (541), Expect = 0.0
 Identities = 547/549 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctctatagagctgccaccgtctctaccactcacctagcttacatgtgggaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctctatagagctgccaccgtctctaccactcacctagcttacatgtgggaaa 263

                                                                       
Query: 64  aactaagccgcccatcggttgaccctgaccgtggctccatgctgtaaaatgcaatgcaga 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aactaagccgcccatcggttgaccctgaccgtggctccatgctgtaaaatgcaatgcaga 323

                                                                       
Query: 124 atttcagtctgtactgagttgagggagagcaccttggtgtgtccagagccagtagccagg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atttcagtctgtactgagttgagggagagcaccttggtgtgtccagagccagtagccagg 383

                                                                       
Query: 184 agtagggcttagtgtttgtgaatcagagagagcaagctgagcaagccagtaagtaacaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agtagggcttagtgtttgtgaatcagagagagcaagctgagcaagccagtaagtaacaag 443

                                                                       
Query: 244 ccagtaaagaacatccctccatggcctctgcatcagctcctacttcctgacctgcttgag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccagtaaagaacatccctccatggcctctgcatcagctcctacttcctgacctgcttgag 503

                                                                       
Query: 304 ttccagtcctgactttctttgctgatgaacagcaatgtggaagtataagctgaataaacc 363
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttccagtcctgacttcctttgctgatgaacagcaatgtggaagtataagctgaataaacc 563

                                                                       
Query: 364 cttcaacttgcttcttgatcgtgatgttttgtgcaggaatagaaactctgactaagacag 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cttcaacttgcttcttgatcgtgatgttttgtgcaggaatagaaactctgactaagacag 623

                                                                       
Query: 424 tgcataaataattaacccacagccatgactgctttgtcattgtgacacagaattggtcac 483
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 624 tgcataaataattaacccacagccatggctgctttgtcattgtgacacagaattggtcac 683

                                                                       
Query: 484 tctgtctgtgtatgcaatgttcaaagggaaaggctatgggatccagcacattaatttttt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tctgtctgtgtatgcaatgttcaaagggaaaggctatgggatccagcacattaatttttt 743

                    
Query: 544 ttattttta 552
           |||||||||
Sbjct: 744 ttattttta 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_f13.g1 MSMg01no358_f13.g1 CHROMAT_FILE:
MSMg01no358_f13.g1 PHD_FILE: MSMg01no358_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:35 2005
         (515 letters)



>mm_chr18_64119163_64120077
          Length = 915

 Score =  980 bits (507), Expect = 0.0
 Identities = 510/511 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttacgtagaccaggctgcctttgaactcagagctttgcctgcctctggtgggattaaat 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tttaggtagaccaggctgcctttgaactcagagctttgcctgcctctggtgggattaaat 746

                                                                       
Query: 61  gtctgggcaaccacatctagcccaaagtgcttttttgttttgttttgtttatctaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtctgggcaaccacatctagcccaaagtgcttttttgttttgttttgtttatctaaataa 686

                                                                       
Query: 121 aaaagagctactaggtaggaacttcagcagacctttgatttctggatgccaagtccttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 aaaagagctactaggtaggaacttcagcagacctttgatttctggatgccaagtccttgg 626

                                                                       
Query: 181 gtgtcagatatgcttcctcaagcccatcagaatttacataagcagtctggctattctcga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtgtcagatatgcttcctcaagcccatcagaatttacataagcagtctggctattctcga 566

                                                                       
Query: 241 ataactcagcaggcttccccactacttaggaggtcaactgattagtctaccaggagagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ataactcagcaggcttccccactacttaggaggtcaactgattagtctaccaggagagtt 506

                                                                       
Query: 301 gctcttcacccacgcccagtgactttgcttccttcaacttatttcacatgtgccacagac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctcttcacccacgcccagtgactttgcttccttcaacttatttcacatgtgccacagac 446

                                                                       
Query: 361 acaccacattaactgattaatgtgttaataaaaaaacccaagatgttaaatattggaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaccacattaactgattaatgtgttaataaaaaaacccaagatgttaaatattggaaaa 386

                                                                       
Query: 421 atgtgtttataacaaaagtttgaagatatgaattgtcctaagacgaagccataataagaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atgtgtttataacaaaagtttgaagatatgaattgtcctaagacgaagccataataagaa 326

                                          
Query: 481 acttaagtgtgagtgtggtgcctgctctccc 511
           |||||||||||||||||||||||||||||||
Sbjct: 325 acttaagtgtgagtgtggtgcctgctctccc 295


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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