BAC Information

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BAC

Clone NameMSMg01-358J13
Chromosome18 (Build37)
Map Location 24,341,474 - 24,504,119
singlet/doubletdoublet
Overlap geneGalnt1, LOC665586
Upstream geneLOC665797, Dtna, Mapre2, EG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik
Downstream gene2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos, Fhod3, 5730494M16Rik, AW554918
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-358J13.T7 (MSMg01no358_j13.b1)MSMg01-358J13.TJ (MSMg01no358_j13.g1)
ACCAG468214AG468215
length723722
length of high quality
(start - end)		532 (37 - 568)529 (67 - 595)
definitionCHROMAT_FILE: MSMg01no358_j13.b1 PHD_FILE: MSMg01no358_j13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:54 2005CHROMAT_FILE: MSMg01no358_j13.g1 PHD_FILE: MSMg01no358_j13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:52:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,503,744 - 24,504,119)(24,341,474 - 24,342,002)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATCA
TCCATTCTTGCTGATTTGTCTATTACTGTAGGAAATGTGCATGTGAGGGT
GACTGTGTATGTGTTTGTGCACAGAGGTGTGTATATGTCTGTGGGTGTGC
GCATACGTGGAGGGCCAGAGGACAACCTCCAGACATCATCCTTCTTTGTG
GTTGTTGACAAAGCCTGGGGCTCGCCATTAGACTCACATCACTAGGACAA
CTGTCAAGTTCCAGAGATGTGCCTGCCTCTGTCTCCCCATTACTGAAGTT
AGAAGCACACATTATTGAGCCTGTGGGGTTTTTTGTTTGTCTGGTTGGTT
TTTGAAACAGGGTCTCACTGTGTATTTCTGGCTGTCCCAAAATTCACTGT
GTAGACCAGGCTGCTCTTGAACTCACAGACACCTGCCTGTCTGACTCCTC
GCCACTGCTGAAGTTTAAGGCACATGCCACCACAGCCCAGTTTGCTTTGT
GGGGTTTGTTGTTGTTGCTGCTGTCTGTTTTCCTTTGGTTTTTTTTTTTT
TGGTTTTTTTTTTTTCTTGTTCTGTTCCTTATGCTTCAAGGGNATGGACA
ACAGAGCTATCTTACTTCCTCCCCCCACGATTTGGTATTGATCTTTTAAC
TAAAAAGGGATTAACTCAATTTTCTAGTAAAACCCTATCGTTTTTTTTTT
TTTCCCTTTTTTTGAGATTTCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAACTACCCAGGAGGTTTTGAAACCTAGCCTGAA
AATTGAAAGTAGCCTCAGGCACCCACAGAAACAAGCCAAATCTTTTTATG
AAAGAAGATGCCTTGAAGTCAGGGCTCAAAGAAGTTCTACAAGGTTTCAG
GGAACTCTCAAATATTAAGGCAAACAATGAGGTAATAGGAGTAAGAGCTG
GACAATAGCAGATTCTATTCACATAGACTTCACTCAGTGCACTTGTCAAG
TAGGAAATGGGTTTGTTTACTCTGTCTACAGAAATAAAAGGGAAGCAAAC
CGTGACTACAGAGAAAGCGCCAGTGAGAATACTCAGCCAAACTGTAAAGT
TAAAGCAGTATATTAAACTTTATTATTTATTATTGACTCTTCTGTGGAGT
GGGGCATAATGTATAATTCTAAGAGGACCAAAAAGGAACTCTAGAAGTGA
ACTAAGTCTGTTTTTATATGTTGAAATGTAACAATAGTTCAAGAACCAGT
CTAAAGGACTCAAGACAGGCTTCTCTGGGCCTTGAATCTCATTAACAACA
GTGAAATTATGTTTACTCTGATCCTGTCAGGTTAGGAGCTCCCCTCCACC
CATGGTGGCACCACTCTCTAGTTCATGGTAATAGCCTTCTAGCCTGTTCC
AAAATTGTCAACAAAAAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no358_j13.b1 MSMg01no358_j13.b1 CHROMAT_FILE:
MSMg01no358_j13.b1 PHD_FILE: MSMg01no358_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:54 2005
         (532 letters)



>mm_chr18_24503744_24504675
          Length = 932

 Score =  681 bits (352), Expect = 0.0
 Identities = 370/376 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatcatccattcttgctgatttgtctattactgtaggaaatgtgcatgtgagggt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 gaattcatcatccattcttgctgatttgtctattactgtaggaaatgtgcatgtgagggt 317

                                                                       
Query: 65  gactgtgtatgtgtttgtgcacagaggtgtgtatatgtctgtgggtgtgcgcatacgtgg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gactgtgtatgtgtttgtgcacagaggtgtgtatatgtctgtgggtgtgcgcatacgtgg 257

                                                                       
Query: 125 agggccagaggacaacctccagacatcatccttctttgtggttgttgacaaagcctgggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 agggccagaggacaacctccagacatcatccttctttgtggttgttgacaaagcctgggg 197

                                                                       
Query: 185 ctcgccattagactcacatcactaggacaactgtcaagttccagagatgtgcctgcctct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctcgccattagactcacatcactaggacaactgtcaagttccagagatgtgcctgcctct 137

                                                                       
Query: 245 gtctccccattactgaagttagaagcacacattattgagcctgtggggttttttgtttgt 304
           ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gtctctccagtactgaagttataagcacacattattgagcctgtggggttttttgtttgt 77

                                                                       
Query: 305 ctggttggtttttgaaacagggtctcactgtgtatttctggctgtcccaaaattcactgt 364
            || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 76  ttgtttggtttttgaaacagggtctcactgtgtatttctggctgtcccgaaattcactgt 17

                           
Query: 365 gtagaccaggctgctc 380
           ||||||||||||||||
Sbjct: 16  gtagaccaggctgctc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no358_j13.g1 MSMg01no358_j13.g1 CHROMAT_FILE:
MSMg01no358_j13.g1 PHD_FILE: MSMg01no358_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:52:54 2005
         (529 letters)



>mm_chr18_24341274_24342202
          Length = 929

 Score = 1000 bits (517), Expect = 0.0
 Identities = 526/529 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactacccaggaggttttgaaacctagcctgaaaattgaaagtagcctcaggcacccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactacccaggaggttttgaaacctagcctgaaaattgaaagtagcctcaggcacccac 260

                                                                       
Query: 61  agaaacaagccaaatctttttatgaaagaagatgccttgaagtcagggctcaaagaagtt 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaacaagccaaatctttttatgaaagaagatgccttgaagtcagggctcaaagaagtt 320

                                                                       
Query: 121 ctacaaggtttcagggaactctcaaatattaaggcaaacaatgaggtaataggagtaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacaaggtttcagggaactctcaaatattaaggcaaacaatgaggtaataggagtaaga 380

                                                                       
Query: 181 gctggacaatagcagattctattcacatagacttcactcagtgcacttgtcaagtaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctggacaatagcagattctattcacatagacttcactcagtgcacttgtcaagtaggaa 440

                                                                       
Query: 241 atgggtttgtttactctgtctacagaaataaaagggaagcaaaccgtgactacagagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgggtttgtttactctgtctacagaaataaaagggaagcaaaccgtgactacagagaaa 500

                                                                       
Query: 301 gcgccagtgagaatactcagccaaactgtaaagttaaagcagtatattaaactttattat 360
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 gcgccagtgagaatactcagccaaactgtaaagttaaagcagaatattaaactttattat 560

                                                                       
Query: 361 ttattattgactcttctgtggagtggggcataatgtataattctaagaggaccaaaaagg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttattattgactcttctgtggagtggggcataatgtataattctaagaggaccaaaaagg 620

                                                                       
Query: 421 aactctagaagtgaactaagtctgtttttatatgttgaaatgtaacaatagttcaagaac 480
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 621 aactctagaagtgaactaagtctatttttatatgttgaaatgtaacaatagttcaagaac 680

                                                            
Query: 481 cagtctaaaggactcaagacaggcttctctgggccttgaatctcattaa 529
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagtctaaaggactcaagacaggcttctctgggccttgaatctcattaa 729


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space:   476961
Effective search space used:   476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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