BAC Information

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BAC

Clone NameMSMg01-359B14
Chromosome18 (Build37)
Map Location 40,989,483 - 40,989,862
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041939, Yipf5, Kctd16, EG225416
Downstream geneLOC677182, LOC100041988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-359B14.T7 (MSMg01no359_b14.b1)MSMg01-359B14.TJ (MSMg01no359_b14.g1)
ACCAG468595AG468596
length746756
length of high quality
(start - end)		477 (30 - 506)380 (61 - 440)
definitionCHROMAT_FILE: MSMg01no359_b14.b1 PHD_FILE: MSMg01no359_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:31 2005CHROMAT_FILE: MSMg01no359_b14.g1 PHD_FILE: MSMg01no359_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:53:31 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAACTGAGGA
ATACCGAATGTCCGAGAAGCACCTAAAGAAATGTTCAACATCCTTAGTCA
TCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTTACACCAATC
AGAATGGCTAAGATCAAAACCTCAGGTGACAACACATGTTGGAGAGGATG
TAGAGAAAGAGGAACACTCCTTCATTGCTGGGGGGATTGCAAACTGGTAC
AACCACTCTGGAAATCAATCTCGAGGTTCCTCAGAAAATTGGAAATATAT
CTACCTGAAGACCCAGATATACCACACTTGGGAATATACCCAAAAGATAC
CCCACTATACGACAGGGGCATGTGTTCCACCATGTTCATAGCGGCCTTGT
CTGTGACAGCCAGAAGCTGGAAAACAACCCAGATGTCCCACAAGAGAAGA
ATGAATACAGAAAATGTGGTCCATTTACAAAATGGAAAACTACTCAGCTA
TTAAGAACTAGGACATCCTGAGTTTTGCAGGCAAATGGATGGAACTAGAT
AATATCATCCTGAGTGAGGGAACTCAGACCCACAAGACTTGCGTGGAATG
GACTCCGCAATAAGTGAATATTAAACAAACCAACCCTACTTAACCAAACC
CACCCAAACCCAACATACCCAACCAAACCAACCAAACCAATTAACCAAAA
AAGGGCGGAAATTCTGAACACAGAACTCTTAAAAACAACACCTGGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTAAATTCCTATTTTTTTGGATATTCATTGATTTCTCTAGA
TTTGAAGAATTTCTGCATTAGTCTAATTAAATAAATTCTATGAGTTTTGT
TGTATTTTGGCTCTATCTCATAGATGGGCTTTCCAAAACTTTCCCAGATT
TCTTGAATGGTATGCTTTCACACACTTGGCTTGTTTTTCTGATATTTGAG
TGCAGCACTTTCTAGATCTAATTTATCATCTCTGATGTTATTTCTAGTGC
TTCATCGAATCTTATAGTGATGCTTTCTTTTCAGCTTTTGTTATGATTTC
TTGGAGGAGTTGAGTTTTTCTGTTACTCATTATTTTGTCTGATCCTCTGA
TGCAATGTGTACAACTGTAGGTTTGGATGCCTCTCTTGGTCTTACTTTCC
TATTTTATTTGATAACCTATTCTTGATGACCCAGTCTCCCATACCTTTGG
ATGGATAATCAACCAGCTTCTTTAATATAAACAATATCTTGGGTTTTACT
CCCAAAATACTTTTTTTTAACCCTTCCAGCCTTTTCTTTTCCTCTCCCTG
CCTTTTCTTCTTTTATTGATACCTTTTTTTTCCCTTTTCCTTTGCTTCCC
TATAATTTCTCCCTTGTTCTTTTTTTCTTCCTTTTCACTTTCTCATTTTT
TTTCTTTTTTTTCCCCCCTTCTTTTCCTTTCTCCTCCCCCTTTTTTTTCC
TTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no359_b14.g1 MSMg01no359_b14.g1 CHROMAT_FILE:
MSMg01no359_b14.g1 PHD_FILE: MSMg01no359_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:53:31 2005
         (380 letters)



>mm_chr18_40989283_40990062
          Length = 780

 Score =  712 bits (368), Expect = 0.0
 Identities = 377/380 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaattcctatttttttggatattcattgatttctctagatttgaagaatttctgcatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaattcctatttttttggatattcattgatttctctagatttgaagaatttctgcatta 260

                                                                       
Query: 61  gtctaattaaataaattctatgagttttgttgtattttggctctatctcatagatgggct 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 atctaattaaataaattctatgagttttgttgtattttggctctatctcatagatgtgct 320

                                                                       
Query: 121 ttccaaaactttcccagatttcttgaatggtatgctttcacacacttggcttgtttttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccaaaactttcccagatttcttgaatggtatgctttcacacacttggcttgtttttct 380

                                                                       
Query: 181 gatatttgagtgcagcactttctagatctaatttatcatctctgatgttatttctagtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gatatttgagtgcagcactttctagatctaatttatcatctctgatgttatttctagtgc 440

                                                                       
Query: 241 ttcatcgaatcttatagtgatgctttcttttcagcttttgttatgatttcttggaggagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttcatcgaatcttatagtgatgctttcttttcagcttttgttatgatttcttggaggagt 500

                                                                       
Query: 301 tgagtttttctgttactcattattttgtctgatcctctgatgcaatgtgtacaactgtag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 501 tgagtttttctgttactcattattttgtctgatcctctgatgcaatgtgcacaactgtag 560

                               
Query: 361 gtttggatgcctctcttggt 380
           ||||||||||||||||||||
Sbjct: 561 gtttggatgcctctcttggt 580


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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