Query= MSMg01no360_c20.b1 MSMg01no360_c20.b1 CHROMAT_FILE:
MSMg01no360_c20.b1 PHD_FILE: MSMg01no360_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:51 2005
(529 letters)
>mm_chr18_70220444_70221373
Length = 930
Score = 955 bits (494), Expect = 0.0
Identities = 521/530 (98%), Gaps = 1/530 (0%)
Strand = Plus / Plus
Query: 1 tgtgattggtgacactgtgtctcagctcttgtttcttagcagtaaatgctgcgctcttct 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 tgtgattggtgacactgtgtctcagctcttgtttcttagcagtaaatgctgcgctcctct 260
Query: 61 atccacaaagtgtttggtagatggtaaacccgacattcggcatctgctttgacttttaag 120
|||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 261 gtccacaaagtgtttagtagatggtaaacccaacattcggcatctgctttgacttttaag 320
Query: 121 ctttctcttttattatagaaaaatattgatctttctctaatagtaataaagtataaaaat 180
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttctcttttattatagaaaaatactgatctttctctaatagtaataaagtataaaaat 380
Query: 181 taagctagataattacaatgaataacagagtgggctctttacagaacag-gaaaaaaaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 taagctagataattacaatgaataacagagtgggctctttacagaacagaaaaaaaaaaa 440
Query: 240 accatcaccaccaccaacaacaaaaaagcaatgacccagaagtagggaacagtgatcact 299
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aacatcaccaccaccaacaacaaaaaagcaatgacccagaagtagggaacagtgatcact 500
Query: 300 attagcagttttcagaaaatgaaaaagacatcacctatgcacctgtcagtatgggtattg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attagcagttttcagaaaatgaaaaagacatcacctatgcacctgtcagtatgggtattg 560
Query: 360 ccaggggttgatgaggatacagaacaagcaaaatattcatttcttgctagtagggggtgt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccaggggttgatgaggatacagaacaagcaaaatattcatttcttgctagtagggggtgt 620
Query: 420 aaacaggtctaatttagcaaatggtacccaactggatagaccctgttctaaatgcatagg 479
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaacaggtctaatttaggaaatggtacccaactggatagaccctgttctaaatgcatagg 680
Query: 480 catggtacctgaaactttacaataaatctaccagaaccaataactttaca 529
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 catggtacctgaaactttacaataaatctaccagaaccaataactttaca 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 930
Length adjustment: 10
Effective length of query: 519
Effective length of database: 920
Effective search space: 477480
Effective search space used: 477480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_c20.g1 MSMg01no360_c20.g1 CHROMAT_FILE:
MSMg01no360_c20.g1 PHD_FILE: MSMg01no360_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:54:51 2005
(441 letters)
>mm_chr18_70382633_70383474
Length = 842
Score = 839 bits (434), Expect = 0.0
Identities = 440/442 (99%), Gaps = 1/442 (0%)
Strand = Plus / Minus
Query: 1 ctaaagcaataccacaagcaataatgaattgtgataaacttccaaagggggg-aaaaatc 59
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 642 ctaaagcaataccacaagcaataatgaattgtgataaacttccaaaggggggaaaaaatc 583
Query: 60 acccttctgaataacaccgaaagccaaagcaaagacttgtgaatagaactgagctgtcct 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 acccttctgaataacaccgaaagccaaagcaaagacttgtgaatagaactgagctgtcct 523
Query: 120 gaacatcaaaattgggatagtttgttcagatgtgttaaaacatcagtgttaaaacttaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gaacatcaaaattgggatagtttgttcagatgtgttaaaacatcagtgttaaaacttaaa 463
Query: 180 ctgcaaaagtaaagtccgaacacataaagtgacatacttactgcttcttcctaggcacac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ctgcaaaagtaaagtccgaacacataaagtgacatacttactgcttcttcctaggcacac 403
Query: 240 cttccaagccactgtcacagattatctcagggagaagtcattggttcattagcaagaagc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 cttccaagccactgtcacagattatctcagggagaagtcattggttcattagcaagaagc 343
Query: 300 catttatctttcctcacattctctcactcagcttcatgccatatgtggccactgatttca 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 catttgtctttcctcacattctctcactcagcttcatgccatatgtggccactgatttca 283
Query: 360 taaagtgctttgcttcctccacttaagaagtcatttcaacattaaaaccactttgctaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 taaagtgctttgcttcctccacttaagaagtcatttcaacattaaaaccactttgctaaa 223
Query: 420 attaggaagtggtaccagagca 441
||||||||||||||||||||||
Sbjct: 222 attaggaagtggtaccagagca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 842
Length adjustment: 9
Effective length of query: 432
Effective length of database: 833
Effective search space: 359856
Effective search space used: 359856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
