BAC Information

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BAC

Clone NameMSMg01-360E23
Chromosome18 (Build37)
Map Location 75,753,231 - 75,833,954
singlet/doubletdoublet
Overlap geneGm672
Upstream geneMyo5b, Acaa2, LOC672799, Lipg, Rpl17, BC031181, Dym, LOC628356, EG667777, Smad7
Downstream geneZbtb7c, 4833419G08Rik, LOC668184, Smad2, LOC668188
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360E23.T7 (MSMg01no360_e23.b1)MSMg01-360E23.TJ (MSMg01no360_e23.g1)
ACCAG469516AG469517
length752769
length of high quality
(start - end)		524 (69 - 592)478 (72 - 549)
definitionCHROMAT_FILE: MSMg01no360_e23.b1 PHD_FILE: MSMg01no360_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:01 2005CHROMAT_FILE: MSMg01no360_e23.g1 PHD_FILE: MSMg01no360_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,753,231 - 75,753,754)(75,833,477 - 75,833,954)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGA
ATTCTGATGCTGTATCAGGAGAACCCCACTTTGAGAACCCGAGGCAGAGT
TGAGGAAAGTGTGTGTTCAGCTAGGGGCTGGAGCACGTTAGGGTAATGTG
TACATCCCAGTGACGAGGAAGGGGCAACCCTGTTTGCTCTATACATGCAT
GAAGTGTGCTCTGACTCTCTGGGTCAGCCAGAAGAGGCCCCATCCACAGG
CTTCATCCTGCTGGCAGCCCATGGCAAAGCACAGGAACATCCTAGCCATC
CGAAGATGTTTGATCCGGCCCCATGCTTCCCCAAGCCCCCCAGCTCAGGT
GACCACACCATCACACACACTGCTGAACTCTCCTGGACTTGACACCACCA
GCCCCCAACTGGCTGGGCAGGCCTTAGAGGCCTGGGATTGTGCAGCGGCT
CACAATGGAAGGAAGAGGGTGTAGGAGGGAGGTCCCTGCGCTGACCCTGG
TATTGTTCTTGGGCCAGAAGAAGGCTTCCTCCACCCAGCTACTGCAACAC
CAGAAAAAAGCGACATCAAGCCAGTGAGAGTCTGCTCGTCCTGTGGGGGC
CGCCCGCTGGTGCTGGCCTGGGAGCCGAGGTCCATTCACAAACGCCTGCC
TGCTGGAGAGCACGTAACCCTGTCCGGCCCCACCGCCGCTCCTGGAGACA
GAAGCCTGGGTAATTGAAAAAACCAGCTTCTCCGCCTTCAAAACCAAGGT
TG

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAAATTAACTGCCGATTTCAAAAGGTT
CAGTGAACTTGCTCTATAAAAGGTTTCATAACAGGATTCCTTTAAGTGCC
CAGCCTCGCCAGTACGCCTGAGAAATGATTTGATTTAGTGCTATGTGGTT
AAAGCACTCCATTTTCCAGCCTAGCCATTAAAAGCAGGGAGGCAGCCTGC
AATTAGCCTGTTGCTCAGTCTTTCTCCTCTGAAGGGCAACTCAGTCCCCA
GCCCTGCACACTCATTGCTGAGCACCTGAACTGGCCATCCCCTGCCTTTG
CTGTAAGTCAGGGGTGGACAGCACCAGCTATCTGGCCACTGATTGGGGCC
AGGGCACTTTTATTTATGTCTGATGAACCAGCACTGGCTTCTATCTATGT
CAGTAGCATGGTTAACTTTCTTCACTTCTGTCTTTGGGGACAGTGACACT
GGCCTCCTCCAGTTAGGGGGCAAGATAATATTGTCCAAGGCATACCGGGT
GTTATATAAACTCATTATCACTTTCACCCTGCCAATGTGAATCAAGTTCT
TTGATGAACTTCTAGACTTCTCTATAGGAAAGCAGGATGCCCCTTGCTGG
GGCCCCTGGAAATCCCAAGGAAACCGTTTCCCCTGGTTGGGGGCTCGAGA
AAAAAATGTCTTTTCCCGGAAGGTTTGGGAAACCATGTGTCCCACGGAAA
ATGTATACAATCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_e23.b1 MSMg01no360_e23.b1 CHROMAT_FILE:
MSMg01no360_e23.b1 PHD_FILE: MSMg01no360_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:01 2005
         (524 letters)



>mm_chr18_75753031_75753954
          Length = 924

 Score =  990 bits (512), Expect = 0.0
 Identities = 521/524 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaccccactttgagaacccgaggcagagttgaggaaagtgtgtgttcagctaggggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagaaccccactttgagaacccgaggcagagttgaggaaagtgtgtgttcagctaggggc 260

                                                                       
Query: 61  tggagcacgttagggtaatgtgtacatcccagtgacgaggaaggggcaaccctgtttgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggagcacgttagggtaatgtgtacatcccagtgacgaggaaggggcaaccctgtttgct 320

                                                                       
Query: 121 ctatacatgcatgaagtgtgctctgactctctgggtcagccagaagaggccccatccaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctatacatgcatgaagtgtgctctgactctctgggtcagccagaagaggccccatccaca 380

                                                                       
Query: 181 ggcttcatcctgctggcagcccatggcaaagcacaggaacatcctagccatccgaagatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggcttcatcctgctggcagcccatggcaaagcacaggaacatcctagccatccgaagatg 440

                                                                       
Query: 241 tttgatccggccccatgcttccccaagccccccagctcaggtgaccacaccatcacacac 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgatccggccccatgcttccccaagccccccagctcaggtgaccacaccatcacacac 500

                                                                       
Query: 301 actgctgaactctcctggacttgacaccaccagcccccaactggctgggcaggccttaga 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 actgctgaactctcctggacttgacaccaccagcccccaactgactgggcaggccttaga 560

                                                                       
Query: 361 ggcctgggattgtgcagcggctcacaatggaaggaagagggtgtaggagggaggtccctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcctgggattgtgcagcggctcacaatggaaggaagagggtgtaggagggaggtccctg 620

                                                                       
Query: 421 cgctgaccctggtattgttcttgggccagaagaaggcttcctccacccagctactgcaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cgctgaccctggtattgttcttgggccagaagaaggcttcctccacccagctactgcaac 680

                                                       
Query: 481 accagaaaaaagcgacatcaagccagtgagagtctgctcgtcct 524
           ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 681 accagaaaaaagcgacatcaagccagtgagagtctgcgcgtcct 724


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 924
Length adjustment: 10
Effective length of query: 514
Effective length of database: 914
Effective search space:   469796
Effective search space used:   469796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no360_e23.g1 MSMg01no360_e23.g1 CHROMAT_FILE:
MSMg01no360_e23.g1 PHD_FILE: MSMg01no360_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:01 2005
         (478 letters)



>mm_chr18_75833277_75834154
          Length = 878

 Score =  878 bits (454), Expect = 0.0
 Identities = 472/478 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaattaactgccgatttcaaaaggttcagtgaacttgctctataaaaggtttcataa 60
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 678 cagaaattaaccaccgatttcaaaaggttcagtgaacttgctctataaaaggtttcctaa 619

                                                                       
Query: 61  caggattcctttaagtgcccagcctcgccagtacgcctgagaaatgatttgatttagtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caggattcctttaagtgcccagcctcgccagtacgcctgagaaatgatttgatttagtgc 559

                                                                       
Query: 121 tatgtggttaaagcactccattttccagcctagccattaaaagcagggaggcagcctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tatgtggttaaagcactccattttccagcctagccattaaaagcagggaggcagcctgca 499

                                                                       
Query: 181 attagcctgttgctcagtctttctcctctgaagggcaactcagtccccagccctgcacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attagcctgttgctcagtctttctcctctgaagggcaactcagtccccagccctgcacac 439

                                                                       
Query: 241 tcattgctgagcacctgaactggccatcccctgcctttgctgtaagtcaggggtggacag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tcattgctgagcacctgaactggccatcccctgcctttgctgtaagtcaggggtggacag 379

                                                                       
Query: 301 caccagctatctggccactgattggggccagggcacttttatttatgtctgatgaaccag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 caccagctatctggccactgattggggccagggcacttttatttatgtctgatgaaccag 319

                                                                       
Query: 361 cactggcttctatctatgtcagtagcatggttaactttcttcacttctgtctttggggac 420
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 318 cactggcttctatctatgtcagttgcatggttaactttcttcacttctgtctttggggac 259

                                                                     
Query: 421 agtgacactggcctcctccagttagggggcaagataatattgtccaaggcataccggg 478
           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 258 agtgacactggcctcctccagttagggggcaagataaaattgttcaaggcataccggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space:   406224
Effective search space used:   406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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