BAC Information

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BAC

Clone NameMSMg01-360F21
Chromosome18 (Build37)
Map Location 88,070,067 - 88,070,533
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
Downstream geneLOC100039961, LOC100039972, LOC623177, LOC665497, LOC100040003, LOC623208, Socs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-360F21.T7 (MSMg01no360_f21.b1)MSMg01-360F21.TJ (MSMg01no360_f21.g1)
ACCAG469559AG469560
length1,148777
length of high quality
(start - end)		---435 (75 - 509)
definitionCHROMAT_FILE: MSMg01no360_f21.b1 PHD_FILE: MSMg01no360_f21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:05 2005CHROMAT_FILE: MSMg01no360_f21.g1 PHD_FILE: MSMg01no360_f21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:55:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTCCTTTTCTTCGCCTCTCCNTCTTTCTTATACTAATAAAATGCTCTC
AGAAAACAGTCAAAAACCACAACATTACATATGTCCACCCACCCATAGTA
TTGTGCTTACTTGTATAGTGACACCACATCAATAGCACACATGTTATACA
GTAGAGAATCATGCCTCACGATCATGTTGCAGCCCCGACTATAATAGAGC
GACTCTTCCATCCTCACGCACACCCGCAATTCAGTGAGGGGGACAAGGTG
AGCCGACAATATATGTGTCACCATCTGTCATTTTATAATTGCAGGCAGCC
ACGAGAGGAACGCACGAACAAAAGAAGCAAAAAGAGAAAGACAAGACCTC
ACGGACATGGAGATAGAGAACAGTGGCCAGAAGCAGCCAGACGACGACAA
ACAAGAAGAGGTGAAATGACACACGAAAAGAAATCAAAACCGTTGTAATG
TTCGCGCTACCGTATAAGTATGCCCTAAATACGAAGGAGTGGTGTAGGAG
CATTGATATTTCTTTGCAGGTAAGAGTTGTAGTTCTCCTGAAATGATAAT
ATCCTTCGGGCTGTGTGGCGGTACGCTTATACAACTTTAATGTAATACGA
TTAAAACTTTAATATATTTATATAAAATAATAGTATAAGTATATACAACA
AGAGATGAACTTGACACAGACAAATTTTCTAACCTGCACCCTATTTGACC
GCAAATATAGAACAAGTATGCATTAACATGTCACTGCAATCATACAAGTC
AAGACTGCCTACCGTATGTACAGCGACAGGCCAGTAGTGATATAATGAAA
ACATACTAACAGAAGATGTTGATTGGAACAGAGAGCATGTTAAACCGCCC
GTAGCTTACAGATATAGCGTAATTTATACACCCCGCCACCATGATGAGCC
GGCTTACTATTACACACTGCGAGATACAACAAGAAGAAAGAATAGAAAAA
ACATTAAAATCTATGAAGAACAACAGGATTGGGCGATGGCTCTCGGACGC
TGATAAATTATGTGTGTAGATGGTCTTACGTGAACAACGCAGATAGGGAT
GTAGTGAGAANAATAGAGCCTATAATATACCACAACAACATACATATGAT
CCAGTTAGTGCCTCTACTTTACCGCACAATGCCACAAATGTGTTACTG

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAAGTTTTACAAATACATCTACTTAGG
CAGATATTTGTGTCTGTAACTACAGCAGAAGTTTGTGTATATAAATACAG
CACTTCTATGTTGGGACAAGAGGTAAAGGAAAGAGAATTTAAAAAGAACA
AAGACCAGTGTGTATGGCATGAGCATCAGGAAACAACAGAAACTACTGTT
CAAATAAGAGGGGAAAAACCAAGGTTGACCCTTGACCTCTGCATTAATAA
CATGTGAACACCCAAATACATGTAACCAATAGAATAAGCAAACACACACA
CACACACACACACACAACACACTGAGAGAGAGGGTGTGTGTCACCCAAAT
ACATGTAACCAATAGAATAAGCAAACACACACACACACTGAGAGAGAGGG
TGTGTATGTGGGAGGGTATACCTGCCTATTAGTAGCTGATGTTTTCAAGC
ATTGAATGTAAATAAGCACTTTTTCTTGAATTTCTATGAGTTTTCCTGAA
CACTATCTAAATTTGCAGAAATCTCTTATTTCCCTTTGGATTTTCTAAGC
TCACACTAGGGTAAAGGACCTCCTCCCCTGGGGCCCATAAAGAAAAAAAA
ACCTTTGGGAATTAAAACCCTTCCTTCCAAAACAAAAAAAAAGTTGGAGG
GGTTGGTCCCTTTTCCGGGGACATTCTTTAATTCCCGGAGAAGGGAAGGA
ATTATCGGGGGGAAAAAATAAAAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no360_f21.g1 MSMg01no360_f21.g1 CHROMAT_FILE:
MSMg01no360_f21.g1 PHD_FILE: MSMg01no360_f21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:06 2005
         (435 letters)



>mm_chr18_88069899_88070733
          Length = 835

 Score =  768 bits (397), Expect = 0.0
 Identities = 434/467 (92%), Gaps = 32/467 (6%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagttttacaaatacatctacttaggcagatatttgtgtctgtaactacagcagaagttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 aagttttacaaatacatctacttaggcagatatttgtgtctgtaactacagcagaagttt 228

                                                                       
Query: 61  gtgtatataaatacagcacttctatgttgggacaagaggtaaaggaaagagaatttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 gtgtatataaatacagcacttctatgttgggacaagaggtaaaggaaagagaatttaaaa 288

                                                                       
Query: 121 agaacaaagaccagtgtgtatggcatgagcatcaggaaacaacagaaactactgttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agaacaaagaccagtgtgtatggcatgagcatcaggaaacaacagaaactactgttcaaa 348

                                                                       
Query: 181 taagaggggaaaaaccaaggttgacccttgacctctgcattaataacatgtgaacaccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 taagaggggaaaaaccaaggttgacccttgacctctgcattaataacatgtgaacaccca 408

                                                                       
Query: 241 aatacatgtaaccaatagaataagcaaacacacacacacacacacaca------------ 288
           ||||||||||||||||||||||||||||||||||||||||||||||||            
Sbjct: 409 aatacatgtaaccaatagaataagcaaacacacacacacacacacacaaacacacacaca 468

                                                                       
Query: 289 --------------------cacaacacactgagagagagggtgtgtgtcacccaaatac 328
                               ||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 cacacacacacacacacacacacaacacactgagagagagggtgtgtgtcacccaaatac 528

                                                                       
Query: 329 atgtaaccaatagaataagcaaacacacacacacactgagagagagggtgtgtatgtggg 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 529 atgtaaccaatagaataagcaaacacacacacacactgagagagagggtgtgtgtgtggg 588

                                                          
Query: 389 agggtatacctgcctattagtagctgatgttttcaagcattgaatgt 435
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 agggtatacctgcctattagtagctgatgttttcaagcattgaatgt 635


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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