Query= MSMg01no360_i23.b1 MSMg01no360_i23.b1 CHROMAT_FILE:
MSMg01no360_i23.b1 PHD_FILE: MSMg01no360_i23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:20 2005
(471 letters)
>mm_chr18_74203161_74204031
Length = 871
Score = 804 bits (416), Expect = 0.0
Identities = 456/474 (96%), Gaps = 8/474 (1%)
Strand = Plus / Minus
Query: 6 ggaattcaggcctcattgctgggggaactcaatctggacaagcagaggttgatatgagca 65
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 858 ggaattcaggcctcagtgctgggggaactcagtctggacaagcagaggttgatatgagca 799
Query: 66 gcctgtccctgtggggagcttgggctgacccgaagttgagtgaagctgatgtgtgttgaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 gcctgtccctgtggggagcttgggctgacccgaagttgagtgaagctgatgtgtgttgaa 739
Query: 126 gcagccgaggaaccaattggatttggcagctcactgtctgcaggttggaaaatggac--- 182
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gcagccgaggaaccaattggatttggcagctcactgtctgcaggttggaaaatggacaca 679
Query: 183 -----atatatgcacccgacatagacacaggaaacagtcccaggaatccctatgggagtg 237
| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 678 cacaaaaatatgcacccgccatagacacaggaaacagtcccaggaatccctatgagagtg 619
Query: 238 acaaggccaccagggatgtggcctttacatcatcttgcccttgcatcaccctccgcctct 297
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 618 acgaggccaccagggatgtggcctttacatcatcttgcccttgcgtcaccctccgcctct 559
Query: 298 gctgagcattccagacttttcaggactacgactactctgttcctcttacgcagatactgg 357
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 558 gctgagcattccagacttttcaggactacgactactctggtcctcttacgcagatactgg 499
Query: 358 tttccaaggaagacgaagggcctcggaatgtttgggaaactctggagcagctgagtcata 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tttccaaggaagacgaagggcctcggaatgtttgggaaactctggagcagctgagtcata 439
Query: 418 aaaaatgcagccatgcaaggggtgtttagaagggactggggtatcgtactcact 471
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 438 aaaaatgcagccatgcgaggggtgtttagaagggactggggtatcgtacccact 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space: 396921
Effective search space used: 396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_i23.g1 MSMg01no360_i23.g1 CHROMAT_FILE:
MSMg01no360_i23.g1 PHD_FILE: MSMg01no360_i23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:20 2005
(467 letters)
>mm_chr18_74016532_74017399
Length = 868
Score = 774 bits (400), Expect = 0.0
Identities = 448/466 (96%), Gaps = 6/466 (1%)
Strand = Plus / Plus
Query: 4 gccagcctggattacttgaaacagtttctaagtaaatg-aatttaaccctaaatataata 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 gccagcctggattacttgaaacagtttctaagtaaatgaaatttaaccctaaatataata 263
Query: 63 aataacccgatacatttatttccttgctggcaggcttttgcaacatttgttttgctattg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cataacccgatacatttatttccttgctggcaggcttttgcaacatttgttttgctatta 323
Query: 123 taataaataccctccagcaaatagttacttttcttttctttttaaagagttatttatttt 182
|| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 324 tagtaaatatcctccagcaaatagttacttttcttttctttttaaag----atttatttt 379
Query: 183 atgtatatgagtacactgtggctgtcttcagatataccagaagaggtcattggatcctat 242
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct: 380 atgtatatgagtacactgtagctgtcttcagacgcaccagaagaggtcattggatcctat 439
Query: 243 aacagatggttgtgagacaccatgtggttgctggg-attaaactcagtgctcttaaccac 301
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 440 aacagatggttgtgagacaccatgtggttgctgggaattgaactcagtgctcttaaccac 499
Query: 302 taagccatctctccagccccgaatagtttcttaatatatcttgccaccatcatcaaccaa 361
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taagccatctctccagccctgaatagtttcttaatatatcttgccaccatcatcaaccaa 559
Query: 362 ggctaataattaattcaaggctaataattaatacacgacacaaagttggcactacccact 421
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 560 ggctaataattaattcaaggctaataattaatacactacacaaagttggcaccacccact 619
Query: 422 atagatctcataactttaagtactttttataataactgcgatggac 467
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atagatctcataactttaagtactttttataataactgcgatggac 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 868
Length adjustment: 10
Effective length of query: 457
Effective length of database: 858
Effective search space: 392106
Effective search space used: 392106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
