Query= MSMg01no360_m18.b1 MSMg01no360_m18.b1 CHROMAT_FILE:
MSMg01no360_m18.b1 PHD_FILE: MSMg01no360_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:38 2005
(440 letters)
>mm_chr18_84265038_84265877
Length = 840
Score = 721 bits (373), Expect = 0.0
Identities = 424/459 (92%), Gaps = 32/459 (6%)
Strand = Plus / Plus
Query: 1 ttaagttattgggaaagtgatccagcaaacagaggtgtcttaaggacgtgtatactgtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttaagttattgggaaagtgatccagcaaacagaggtgtcttaaggacgtgtatactgtgt 254
Query: 61 gctggcctgaattcacatcctggttagactgtctgtgaaggaaaagagaa--gtccctgt 118
||||||||||||||||||||||||||||||||||||||||||||| || ||| |||
Sbjct: 255 gctggcctgaattcacatcctggttagactgtctgtgaaggaaaa---aactgtc--tgt 309
Query: 119 tctaggaagaaattgctattagaaccggagtggattctggaagagaaagctatagcgttg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tctaggaagaaattgctattagaaccggagtggattctggaagagaaagctatagcgttg 369
Query: 179 ggagactgaaaactaatgtggacagaggaataagaaaactctatgatgattcatcagtaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggagactgaaaactaatgtggacagaggaataagaaaactctatgatgattcatcagtaa 429
Query: 239 aaggcaaaatttttttt-----------------ggaatcacaaaaggggactcactctg 281
||||||||| ||||||||||||||||||||||||||
Sbjct: 430 aaggcaaaa--------aaaaaggggggggcgggggaatcacaaaaggggactcactctg 481
Query: 282 gcctgggaagggttaaaaggagactttctgtcgccaaggaccaaatctcacatagctcca 341
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 482 gcctgggaagggttaaaaggagactttctgttgccaaggaccaaatctcacatagctcca 541
Query: 342 aacacagtaggcaccctagccatctaaaaccacatccatttgcttctcctaagaggctca 401
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aacacagtaggcaccctggccatctaaaaccacatccatttgcttctcctaagaggctca 601
Query: 402 gtgtggaaagtgcgcttggtctctggtgcaggcacggga 440
|||||||||||| ||||||||||||||||||||||||||
Sbjct: 602 gtgtggaaagtgtgcttggtctctggtgcaggcacggga 640
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space: 358161
Effective search space used: 358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no360_m18.g1 MSMg01no360_m18.g1 CHROMAT_FILE:
MSMg01no360_m18.g1 PHD_FILE: MSMg01no360_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:55:38 2005
(462 letters)
>mm_chr18_84425045_84425906
Length = 862
Score = 862 bits (446), Expect = 0.0
Identities = 458/462 (99%)
Strand = Plus / Minus
Query: 1 ctcactcatcagccatgctggtggccaaggccgtgcccacaactaagttggagactttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 ctcactcatcagccatgctggtggccaaggccgtgcccacaactaagttggagactttag 603
Query: 61 aaagttttaacctcccagcgtctgtgatgcagaccagctctcgcctggatggtttgccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aaagttttaacctcccagcgtctgtgatgcagaccagctctcgcctggatggtttgccct 543
Query: 121 gctatctcaccatcccctaaagaacctctggcatggcggctcctgttggagaagcccatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 gctatctcaccatcccctaaagaacctctggcatggcggctcctgttggagaagcccatg 483
Query: 181 gtggtattggtcttcatcagagcacagtgctttcagtaaggattgacattgttacctgtc 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 482 gtggtattggtcttcatcagagcagagtgctttcagtaaggattgacattgttacctgtc 423
Query: 241 cttacagtctgggagacaggaggctgctgtgacaaagtggtatgtgaggagcccctgttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 cttacagtctgggagacaggaggctgctgtgacaaagtggtatgtgaggagcccctgttg 363
Query: 301 tacacaggacttgtgagtgtccaggcgtggacctctgtcctgtgtttacattgctgccgt 360
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 362 tacacaggacttctgagtgtccaggcgtggacctctgtcctgtgtttacattgctgccat 303
Query: 361 tgccccttgctgctgctgttcagttcgcaatacttcaggctaactcgccccttctgctgg 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 302 tgccccttgctgctgctgttcagttcgcaatacttgaggctaactcgccccttctgctgg 243
Query: 421 gctgggcagtgagaactcccctctgggtctgatctctgctct 462
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gctgggcagtgagaactcccctctgggtctgatctctgctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
