Query= MSMg01no362_c07.b1 MSMg01no362_c07.b1 CHROMAT_FILE:
MSMg01no362_c07.b1 PHD_FILE: MSMg01no362_c07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:24 2005
(523 letters)
>mm_chr18_57214384_57215306
Length = 923
Score = 975 bits (504), Expect = 0.0
Identities = 519/524 (99%), Gaps = 1/524 (0%)
Strand = Plus / Minus
Query: 1 aatatcaatatttgaattctttgtcatttgtttcatctaactcagaatcttttaagtcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aatatcaatatttgaattctttgtcatttgtttcatctaactcagaatcttttaagtcag 721
Query: 61 tgactagagggttgtacactcttggagaactcaggttactaggaggatctggaattcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 tgactagagggttgtacactcttggagaactcaggttactaggaggatctggaattcaaa 661
Query: 121 gccatccttagcttatagagttagttcaaggccagcttgggatacatagggccctatctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 gccatccttagcttatagagttagttcaaggccagcttgggatacatagggccctatctc 601
Query: 181 -aaaaaaaaatagtattacaaattcaaaacaggaaaattaaagtatagaaggaagaaaaa 239
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 600 aaaaaaaaaatagtattacaaattcaaaacaggaaaattaaagtataaaaggaagaaaaa 541
Query: 240 ttgttaaaaactaaggaaaatagaaaaaaagaatcaagaaaaagaattatttacatgtgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 ttgttaaaaactaaggaaaatagaaaaaaagaatcaagaaaaagaattatttacatgtgt 481
Query: 300 attctctatgtttagatacaagcagtatgcatgtaagttacatacatatgcaaattccaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 attctctatgtttagatacaagcagtatgcatgtaagttacatacatatgcaaattccaa 421
Query: 360 atacaagaaaattgatttttaaaaagtcttattgttgtgttttacaaaaagatatagaga 419
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 420 atacaagaaaattgattttaaaaaagtcttactgttgtgttttacaaaaagatatagaga 361
Query: 420 agagaaggaatatgtttggtggaggtgcagtcaggtgtggggcaagggtgctaaggtatc 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 360 agagaaggaatatgtttggtggaggtgcagtcaggtgtggggcaagggtgctaaggcatc 301
Query: 480 ctttcccctgagggaccagtcacatgatggtgtagtatagagta 523
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctttcccctgagggaccagtcacatgatggtgtagtatagagta 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 523
Length of database: 923
Length adjustment: 10
Effective length of query: 513
Effective length of database: 913
Effective search space: 468369
Effective search space used: 468369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no362_c07.g1 MSMg01no362_c07.g1 CHROMAT_FILE:
MSMg01no362_c07.g1 PHD_FILE: MSMg01no362_c07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:57:24 2005
(500 letters)
>mm_chr18_57059233_57060132
Length = 900
Score = 944 bits (488), Expect = 0.0
Identities = 497/500 (99%)
Strand = Plus / Plus
Query: 1 cataccacatggcctttaggggaaaagatcgtgcattatctcagccctaataacacttgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cataccacatggcctttaggggaaaagatcgtgcattatctcagccctaataacacttgt 260
Query: 61 ctgctgattaccagaagactcagcaatagagatgagagttatatttaaatgctcgtttaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgctgattaccagaagactcagcaatagagatgagagttatatttaaatgctcgtttaa 320
Query: 121 gttccttcctcaccacttaagcctggcctacatacaactggcatagtttgtgactatgaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gttccttcctcaccacttaagcctggcctacatacaactggcatagtttgtgactatgaa 380
Query: 181 aaacatacctacctacctctgttcatggtggttctctcgttgaaagaagtatgatggtcc 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 381 aaacatacctacctacctctgttcatggtggttctctcgctgaaagaagtatgatggtcc 440
Query: 241 ttacatttgcacgggcaaagaaactcatatgcataaaatatctaagcaaaagagatgggc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttacatttgcacgggcaaagaaactcatatgcataaaatatctaagcaaaagagatgggc 500
Query: 301 atagagaagaacagcaatttcaccagctccaaattggagtcagttgttattatggttagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atagagaagaacagcaatttcaccagctccaaattggagtcagttgttattatggttagt 560
Query: 361 cagggtttattttctgtaatgaatgtaaagatgattagttatttcaacattccagtgctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagggtttattttctgtaatgaatgtaaagatgattagttatttcaacattccagtgctg 620
Query: 421 cattggcatgaagagggaactactgagaaaccatttttccagagcctgggcagctttgcc 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 cattggcatgaagagggaactacttagaaaccatttttccagagcctgggcagctttgcc 680
Query: 481 tcgagtgaaacagcatcact 500
| ||||||||||||||||||
Sbjct: 681 ttgagtgaaacagcatcact 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space: 436100
Effective search space used: 436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
