BAC Information

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BAC

Clone NameMSMg01-362J15
Chromosome18 (Build37)
Map Location 48,184,760 - 48,185,345
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362J15.T7 (MSMg01no362_j15.b1)MSMg01-362J15.TJ (MSMg01no362_j15.g1)
ACCAG471248AG471249
length7251,572
length of high quality
(start - end)		589 (49 - 637)---
definitionCHROMAT_FILE: MSMg01no362_j15.b1 PHD_FILE: MSMg01no362_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:02 2005CHROMAT_FILE: MSMg01no362_j15.g1 PHD_FILE: MSMg01no362_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTCACTCACATCCAGCCAAGAAACTTTGTGGCTTTTCCTTTA
GAGTCAGTCATCCATGCCAGCTGCATTAGAAACACCGCACAAAGGCAATG
GTAGAAAAAGTAGGTCATTTGTATCCAGAGACTTAACATGGTATTTTCAG
TTCAAATATTAGATAATTTGAGAATTATACAAAATGGCTTCTGCTAGCAA
GCCAAATTAGTCTCCAGGATCTTATTCTGACAGGGCTCTTAATATGACTT
ACACAATGTCAGAACAGAAAGAAATAAGCAAGCAGACGAAAACATCAGAT
GAGGAAAAAAAAATCCATTTCATCTCCTTCAAACAGCAATGTACATCCAA
AAGCAGAATTTCTGGTCTGACTTACCACAGCTAAGAGCTGGGCTCACTTA
AATGATAAATTGAATAACAGCCCATAATAATGCACTTTTATGCTTTAATA
CATTACAAGGCTTTCATGTTTTACAGTAAAGTGGAGAATAATTCTCCTAC
CATTTTTATTTATTTAACACAGAATAATGAATTTTATATGTCTGATTACA
TGCTCAGACATATATAAATTTCTCTCATATTGTTATCTTGATACAACCTT
AAGATGGGAAGATATTAAAAGCAGGAGCAGACCGATTTCAACTACTGTAG
ATGCATCTACACATTTTATTTTCCC

ATATAATAGATACAAGAGGGTGTTAAGAGTCGGAGGAGCGAGAGGGAGAG
AGTGACGTTACGAGACACAACACAGTATATGTCNTTGAGTCCGTGTCTAT
GCCGCGTCGTGTCCGCTCGCCGTGGTGCTCCTGCTCGAAATAGACGAATA
AGCACGACCGACGTAGATGAAGAGCGAGAAGAAGTACCACAACTAGTATA
TAAACGACACACAACACACGCATCACAGATCACATCTATATATCCTCTCC
TCCGCGCGCTGCACGTGAGGCGCTCCAGCACGCCATGGAGNACGAGCGAC
GTAAGATTGCCAAACTATATAGACTGATATTATCACAGACCTCNGCCTCA
CGTTTGCTCAGTTGCCAACTCTGACAATTATGTAAATGATATAAGAGCAG
GGACGCAGCGATGGCGCCGCTGGCGCACGGGTCGTGATGGTGCAGTACGA
TGCCGGTACGGCTTGTAGATGTTCACGTGGCGTCGCTCAGCACATGTCTG
TGGATGAGCGTGATGCTGACGTTATAAATAGGACGAATGAATTACGAGAG
ATGAGAGGTATGTAGTAGGGGTAGAGAAAGATCCCGTGCGTGCAGCTAGC
GACGGTCCGTCANTATCTTATCTATCTCAGCCTCATCTCTCGCGCCGTAC
CCTCATTACTGCGCCCNTCTCATCCTCGCTCACACAGCATTATAAAGATG
AAGAGGTGCACAGGTGTCGTAGCACCATTACCACTAGATCACAAGGATGT
ATGACTAACGCGTTAGCGCGACGATCAGTGTTTACTAATAAACAGAGAGA
TGGACTAATCGGCGGAGCGCTAACATCATGATGATACACCGCGATCAAAG
GCAACCGACAATGACGACTGCTAGATATTGTCGCACCGCGGTGATCGAGT
GATGTGTTTAGCGACGCAGCGTAAGTCTCGACGCTGGTGGCGAGACGATA
AGCGAATGCATAAGTACAAAGCAGATCTAGAGCAGCTATCCAGCGATAGA
CACAAGCATCATCTATCGTTCATCTCTAACTGCTCAACGGCGATTTACAG
TACACCCGTCGCACGCCCGGAGATATACTAAATGATTGAATATATGTGAC
TACTTCCACACCACTGTATGTATACTCTAATACTGTTGTAGACACACCGC
GCGCGCGAGAGGCTAGTATAGCAGGATAGACTCACCTACACAACGCGACA
CATGTACCNCCCCCCTTGCTTATCTTGATTAATTACCCGCCGCCGTCTGA
TCANTAACCGCTATTATCATCGATAAACGAACACGCACNGACACACATGT
CGTAATAGATAAGATTACATACGACACGCGGAGTGTATGAGCATGTCACC
CTATACATATACTTCTACTCGACATAGTACTACGACTATGTGTAACACAC
ACGNCAGCANCACAGCTTACTACAGATAAGTTATCATGTTATAATCGACC
ACCGCGTCCACGTGAGTAGATGTCGCAGCCACCGCACATGCATATATGTC
TAATATGCTCATACGTCTGCACGAACTACTACGCACGCCTGCGAGTGTGA
TGGACGACCCGACGCTCTAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_j15.b1 MSMg01no362_j15.b1 CHROMAT_FILE:
MSMg01no362_j15.b1 PHD_FILE: MSMg01no362_j15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:02 2005
         (589 letters)



>mm_chr18_48184556_48185545
          Length = 990

 Score = 1118 bits (578), Expect = 0.0
 Identities = 584/586 (99%), Gaps = 1/586 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcactcacatccagccaagaaactttgtggcttttcctttagagtcagtcatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 gaattcttcactcacatccagccaagaaactttgtggcttttcctttagagtcagtcatc 731

                                                                       
Query: 65  catgccagctgcattagaaacaccgcacaaaggcaatggtagaaaaagtaggtcatttgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catgccagctgcattagaaacaccgcacaaaggcaatggtagaaaaagtaggtcatttgt 671

                                                                       
Query: 125 atccagagacttaacatggtattttcagttcaaatattagataatttgagaattatacaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 atccagagacttaacatggtattttcagttcaaatattagataatttgagaattatacaa 611

                                                                       
Query: 185 aatggcttctgctagcaagccaaattagtctccaggatcttattctgacagggctcttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aatggcttctgctagcaagccaaattagtctccaggatcttattctgacagggctcttaa 551

                                                                       
Query: 245 tatgacttacacaatgtcagaacagaaagaaataagcaagcagacgaaaacatcagatga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tatgacttacacaatgtcagaacagaaagaaataagcaagcagacgaaaacatcagatga 491

                                                                       
Query: 305 gg-aaaaaaaaatccatttcatctccttcaaacagcaatgtacatccaaaagcagaattt 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggaaaaaaaaaatccatttcatctccttcaaacagcaatgtacatccaaaagcagaattt 431

                                                                       
Query: 364 ctggtctgacttaccacagctaagagctgggctcacttaaatgataaattgaataacagc 423
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ctggtctgacttaccacagccaagagctgggctcacttaaatgataaattgaataacagc 371

                                                                       
Query: 424 ccataataatgcacttttatgctttaatacattacaaggctttcatgttttacagtaaag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccataataatgcacttttatgctttaatacattacaaggctttcatgttttacagtaaag 311

                                                                       
Query: 484 tggagaataattctcctaccatttttatttatttaacacagaataatgaattttatatgt 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tggagaataattctcctaccatttttatttatttaacacagaataatgaattttatatgt 251

                                                         
Query: 544 ctgattacatgctcagacatatataaatttctctcatattgttatc 589
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctgattacatgctcagacatatataaatttctctcatattgttatc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 990
Length adjustment: 10
Effective length of query: 579
Effective length of database: 980
Effective search space:   567420
Effective search space used:   567420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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