BAC Information

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BAC

Clone NameMSMg01-362M04
Chromosome18 (Build37)
Map Location 90,123,227 - 90,123,733
singlet/doubletsinglet
Overlap genenone
Upstream geneRttn, Cd226, Dok6, LOC383320
Downstream geneLOC620693, Eif3s6-ps2, LOC665526, Txndc10, LOC666779
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-362M04.T7 (MSMg01no362_m04.b1)MSMg01-362M04.TJ (MSMg01no362_m04.g1)
ACCAG471369AG471370
length1,187773
length of high quality
(start - end)
---509 (75 - 583)
definitionCHROMAT_FILE: MSMg01no362_m04.b1 PHD_FILE: MSMg01no362_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:14 2005CHROMAT_FILE: MSMg01no362_m04.g1 PHD_FILE: MSMg01no362_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:58:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATAACCTGCGCGCGCGGTGACGACCCACACTTTCTCACACGGACCCGCGG
ATTTTTCTGCTCATACCTCAAACATTGTATGGTTGTGATTCTATACGCAG
ATGACGCAGCACATCATACACATGTTGATGTGTGAGTAATATATAGACAC
TCTACTACATATCATAATAGATTATATATACCACTTATATATCACCCACT
AAACAAATATCTTGCTTTCACTCTATGTGGTTTGACATATATTGTAGATA
TGTGGATTTAAGACACGGCCCAACAACCTCGCAGCGAGCCGTTGCTCGTC
TCCGCAAACTGAACTCTACCTCTTCTCACTATACACATATACACCGGGAT
ATGAGGAAAGATAAAAGAGAGATGAGGAAACACATCAACGTTGGTTGGTC
TTGTATTTTTCCCAGCAGCGATTTAAATAGCTAAGAGGGAGAGATATAAA
CAAAGGCAAGAGAGCAGACGAATGAAAAGACATACACACCAGCTCGAATA
AGACGCATACTCTAATAAACATCGCCAGCTCCGTTTATGGTAACACACGT
CACGAACATATATAACCACGCATCCCTCAACCCGCCGTTCTCTATCAACT
AAATAATATTTAAAATACCGATAATAATATGTACCGCGCAGAAGCAATAA
CGATGGAGCTAAAACGACATTCTAAATAATATTCACCACCCCCACGTTTC
GTCGTAGATATTCGCTGGTTCTGCGCGCACGTGACACACGTCTTTGTATG
CACCGCCACTATAAGACTGCACGCGTCATTTAGTCTTTCTTAGTTTCTTT
AATTCCTGTCCTCAGACCCGACCGTCCTTATATATATCTCGGTACGCCCG
ACAATATGCTTATTATAGCGTCCATAATATTACTAGTACCAGCGCGCTAT
GTATCTTTGTGTTGATGAACCTCGTATTAGTCATCCCGCGCGCCGCATAA
TTCCGCCGCCCGGCGCGCATATCTGTCTCATGACCACTGTACCATCCGCC
CTCAATTCCCACTTGAATAATNTAGTATTTTTACTACCTCATCATTATCT
ACACATCTCGCCCACCGGCCTCGCTCATCCTCTTCGTCTCTCTGCCTGCT
ATATTATGAATTATCTTTCCTACGCCCTGCTCAACATATGCGACGTATCT
GAGCGGAGTGCGCTGTCCGCAGCGAGAGCGTACTATA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTATCTTCAGAATTGATCCGAAGCT
TTTTCCTAGGCAAGAGTGTATCTGAATTTTCATTATCATTTACATGGTGG
TCTCATTGGGGAATTTTCTTATGTATGATTTGATCAGACAATGGGCTAGC
ATTATGTCTAATTTTCAGCTACATTGGGGCATTCTCCAGTACAGAATCGT
CTCACTGTGAGTTCAAGTTGAAAATGTTTCATTAATTTAATACCTGGAAA
ATATTTTCACATTTCACAGTTTATTTCATGTAAAATATATCTTATATACT
AAGTATCAGATTTCATGTAGTAATTTTTTTTAAAAAGTGTGTATAATATG
TAGTCATAGAAAACTTTTTTCTGTACTCTATTGAAGAGCTACTGCTTGCA
AGTAGTACAATACATTTTTCTGCTCCCACATCAGTGTCAAGGGCCTAGCA
AAAACTCTTATGTAAAATATAAATGAAATAATGAGTGCATTAGTTATATA
AATTATTTACAAAATTACTCTAAATTTTATTTCCTACACATTCCCTTGTT
ATCTCTCACTCAGACAAAAGAATAAGTCATTGGCAGTGCTAATAACTAAA
AGTTGAAATGGTAATACCAAGTCTTAATATATTTCTTTTTGGGTCTTTTT
TAATAGCCTCTTTCTGTGGTTCCGATTGACCTTTGAATATTTTGGAGCCT
CTTGGCCTCTATCTTCTCAGTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no362_m04.g1 MSMg01no362_m04.g1 CHROMAT_FILE:
MSMg01no362_m04.g1 PHD_FILE: MSMg01no362_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:58:14 2005
         (509 letters)



>mm_chr18_90123027_90123933
          Length = 907

 Score =  957 bits (495), Expect = 0.0
 Identities = 505/509 (99%), Gaps = 2/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttatcttcagaattgatccgaagctttttcctaggcaagagtgtatctgaattttcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttatcttcagaattgatccgaagctttttcctaggcaagagtgtatctgaattttcatt 260

                                                                       
Query: 61  atcatttacatggtggtctcattggggaattttcttatgtatgatttgatcagacaatgg 120
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 261 atcatttacatggtggtctcattgggaaattttcttatgtatgattagatcagacaatgg 320

                                                                       
Query: 121 gctagcattatgtctaattttcagctacattggggcattctccagtacagaatcgtctca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctagcattatgtctaattttcagctacattggggcattctccagtacagaatcgtctca 380

                                                                       
Query: 181 ctgtgagttcaagttgaaaatgtttcattaatttaatacctggaaaatattttcacattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtgagttcaagttgaaaatgtttcattaatttaatacctggaaaatattttcacattt 440

                                                                       
Query: 241 cacagtttatttcatgtaaaatatatcttatatactaagtatcagatttcatgtagtaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cacagtttatttcatgtaaaatatatcttatatactaagtatcagatttcatgtagtaat 500

                                                                       
Query: 301 tttttttaaaaagtgtgtataatatgtagtcatagaaaacttttttctgtactctattga 360
           ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttttt--aaaagtgtgtataatatgtagtcatagaaaacttttttctgtactctattga 558

                                                                       
Query: 361 agagctactgcttgcaagtagtacaatacatttttctgctcccacatcagtgtcaagggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agagctactgcttgcaagtagtacaatacatttttctgctcccacatcagtgtcaagggc 618

                                                                       
Query: 421 ctagcaaaaactcttatgtaaaatataaatgaaataatgagtgcattagttatataaatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctagcaaaaactcttatgtaaaatataaatgaaataatgagtgcattagttatataaatt 678

                                        
Query: 481 atttacaaaattactctaaattttatttc 509
           |||||||||||||||||||||||||||||
Sbjct: 679 atttacaaaattactctaaattttatttc 707


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 907
Length adjustment: 10
Effective length of query: 499
Effective length of database: 897
Effective search space:   447603
Effective search space used:   447603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)