Query= MSMg01no363_k10.b1 MSMg01no363_k10.b1 CHROMAT_FILE:
MSMg01no363_k10.b1 PHD_FILE: MSMg01no363_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:26 2005
(507 letters)
>mm_chr18_57738539_57739445
Length = 907
Score = 949 bits (491), Expect = 0.0
Identities = 503/507 (99%)
Strand = Plus / Plus
Query: 1 catagaggagtaaaagcagcttggagacttgagtgtgaaggtggatgtcataaatcaata 60
||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct: 201 catagaggagtaaaagcagcttggagatttgagtgtgaaggtggatgtcgtaaatcaata 260
Query: 61 tgattttgttgtgcctcctttggggaagggatgggtgcattttgtaataaatacagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgattttgttgtgcctcctttggggaagggatgggtgcattttgtaataaatacagaata 320
Query: 121 tatacatcatactatgtaagaacattttgggtaatccatatattataagagcatatgtat 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatacatcatagtatgtaagaacattttgggtaatccatatattataagagcatatgtat 380
Query: 181 gtatacacatgtttttgcatgtatatgtgtatatatatacacatatatagtgtgtgtgtg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatacacatgtttttgcatgtatatgtgtatatatatacacatatatagtgtgtgtgtg 440
Query: 241 gtagtgtgaataagaatagcttccagaggctcatacgctctaatattttgtcccagttaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagtgtgaataagaatagcttccagaggctcatacgctctaatattttgtcccagttaa 500
Query: 301 tggaactgtttagaaagcattaagaagtgtaaccttataggaagagctatgtcattttga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggaactgtttagaaagcattaagaagtgtaaccttataggaagagctatgtcattttga 560
Query: 361 ggtttcaaaagcccataccattcccaatgtgtctctctgtcttctttctgcttatggatc 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtttcaaaagcccataacattcccaatgtgtctctctgtcttctttctgcttatggatc 620
Query: 421 aggctgtaatctcccatttattgcttcagtaccatacctgcctgattcctcagtccctga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aggctgtaatctcccatttattgcttcagtaccatacctgcctgattcctcagtccctga 680
Query: 481 catgaagttcatggactcaccctctag 507
|||||||||||||||||||||||||||
Sbjct: 681 catgaagttcatggactcaccctctag 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no363_k10.g1 MSMg01no363_k10.g1 CHROMAT_FILE:
MSMg01no363_k10.g1 PHD_FILE: MSMg01no363_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:26 2005
(536 letters)
>mm_chr18_57904422_57905357
Length = 936
Score = 959 bits (496), Expect = 0.0
Identities = 529/542 (97%), Gaps = 6/542 (1%)
Strand = Plus / Minus
Query: 1 tgtctgtctgtctgtctgtc--tctgtctg--tctgtctgtctgtctgtc--tctctctc 54
|||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||
Sbjct: 797 tgtctgtctgtctgtctgtctgtctgtctgtctctgtctgtctgtctgtctgtctctctc 738
Query: 55 tctgtgtatgtgcactcgtgcaagtgtgtgttcattaatgtaggtattagaggaattctg 114
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tctgtgtatgtgcactcgcgcaagtgtgtgttcattaatgtaggtattagaggaattctg 678
Query: 115 tcagacttgatgttttcctagctttttggaggtcactggttcccttcctccgtggcactc 174
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 677 tcagacttgatgttttcctagctttttggaggtcactggctcccttcctccgtggcactc 618
Query: 175 tggcagtttctgtcacatcccatagctggctctgccctgtcagtcttgcgggacttcctt 234
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 617 tggcagtttctgtcacatcccatagctggctctgccctgccagtcttgggggacttcctt 558
Query: 235 caggaattataccagtgtaactttcagtgttattttgagagctcaagtaaacttggactg 294
|||||| || |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caggaagtagaccagtataactttcagtgttattttgagagctcaagtaaacttggactg 498
Query: 295 ggggttgggggactttgccttagatttccaggcttgtgactttgtaaaaatttcccaaat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggggttgggggactttgccttagatttccaggcttgtgactttgtaaaaatttcccaaat 438
Query: 355 gcttgcacaacctgtaatagaaccacgctgctttgaactcccgcaggtgcacggttttac 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gcttgcacaacctgtaatagaaccacgctgctttgaactcccgcaggtgcacggttttac 378
Query: 415 agtgcaatattttcagatagaatttgtcttaatcttccagttaagcctctttatatgaac 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 agtgcaatattttcagatagaatttgtcttaatcttccagttaagcctctttatatgaac 318
Query: 475 agagctgccaagatgacaaatacaatttacttacgagttgtttgtctagttaccagtaag 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agagctgccaagatgacaaatacaatttacttacgagttgtttgtctagttaccagtaag 258
Query: 535 tc 536
||
Sbjct: 257 tc 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
