BAC Information

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BAC

Clone NameMSMg01-363L05
Chromosome18 (Build37)
Map Location 53,341,510 - 53,534,709
singlet/doubletdoublet
Overlap geneSnx2, Gm1859, Snx24
Upstream geneFtmt, Srfbp1, Lox, Zfp474, 1700034E13Rik, Gykl1, Sncaip, A730036E13Rik, LOC667317, LOC100042430
Downstream genePpic, Prdm6, Ccdc100, Csnk1g3, EG433184, LOC667360
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-363L05.T7 (MSMg01no363_l05.b1)MSMg01-363L05.TJ (MSMg01no363_l05.g1)
ACCAG472074AG472075
length746774
length of high quality
(start - end)		474 (65 - 538)449 (83 - 531)
definitionCHROMAT_FILE: MSMg01no363_l05.b1 PHD_FILE: MSMg01no363_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:30 2005CHROMAT_FILE: MSMg01no363_l05.g1 PHD_FILE: MSMg01no363_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:59:30 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,534,277 - 53,534,709)(53,341,510 - 53,341,958)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTGTAGGTTACGTTCAACATAAGTCTTCCTTCCCTTTTTGGTTTTCCCC
TGCTCCTAAGAAGCAGATTTCTGGGGCTGGAGAGATGGCTCAGCCGTTAG
AGAGCACTGGGTGTTCTTCCAGAGGTCTTGAGTTCATTGCCAGCACTCAC
ATGGTGGCTTGTAACTGTCTATAACTGGAGTCTCATGGGATCAGATGCCC
TCCTCTGGTGTGCAAAACACACCTATGCATAAACTAAATACATAATTTAA
AAAATTTTTCTGCAGTAGGCATTGTTTAATTGTGACTGAATTTTCTTGAA
GTGTTTTGCTTTTCCCAATATATACTTTTTTGTTGTATTTATAAGTTCAA
CTCAAACCACAGATAAATTAAAAACAATCATGGGAATTTAAAAACACATT
CCTTTCTTCAGATTTAAATTTTATCTTAACATCTCAACTAATTTGTACTA
GTATATAAAAAATCCCAGAGGCAGAGGCTGGAGAAATGGCTCAGTGGTTA
AGAGCATTTGCTGTCCTACAGGGGATCTGAGTTTGGTCCCAGCACCATGT
CAGGTTGTCTCCCAGCTGGCTGTAACGCCAGCTTCCGGAGATCAGAAGTT
TTTCTAGAAACCTGCTTTCTCTTGCATATGGCGTATAATTCCTTACCCTA
ATTCCGGATATTAATTCCAAGTCCTAGGTTTTAAACATTTTCTTGC

NNNCCTCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAGTGAATGCATCTGG
GGCTAGATTTCTTTTAATTAGAAGATTTTTATTACTGTTTAAGTCTTGCT
TCTTTCAGACATGGTTACATCATTTATTTCTTAGTTTAACTTCAGTAAGT
CATATGCATTTAGAAGTTAATTTCCTTTTGATTTCAAATTTAGTAGAATA
TAAGTTTTAAATTTTTTAATTTATTTTTTATTAGATATTTTCCTTATTTA
CATTTCAAATGTTATCCCCTTTCCTGGTATCCCCTCCAAAAACCACCCTA
TCCCATCCCCCCACTCCCCCTGCTCCCCAACCCACCCACTCCAGCTTCCT
GGCCCTGGCATTCTCCTATACTGGGGCATAGAACTTTCACAGGACCAAGG
GCCTCTTCTCCCATTGATGACCAACTAGGACATCCTCTGCTGCATATGCA
TCTAGAGTCATGTAATTCCTTTTTTTGTTTTTGGTTTGGTTTTTAACTTT
TTTTTTAGACTTATTTATTTATTGTAAATATGTAAGCACACTGTATCTGT
CCTCAAAAACACCAGTAGAGGGCGGCAGATGGTCCTATCCGATGGCCTGT
AAGTCTCCCTGTGGGTTGGTCGGGAATTGAAACCAAGGACCTTCTTTAAA
AACAGTCTCGGGTTCTTTTTTCTGCTGAAACCCATCCTTCCCATGGCTGG
TTATTATAACATTTTTTATACAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no363_l05.b1 MSMg01no363_l05.b1 CHROMAT_FILE:
MSMg01no363_l05.b1 PHD_FILE: MSMg01no363_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:30 2005
         (474 letters)



>mm_chr18_53533836_53534709
          Length = 874

 Score =  799 bits (413), Expect = 0.0
 Identities = 428/433 (98%)
 Strand = Plus / Minus

                                                                       
Query: 42  ctaagaagcagatttctggggctggagagatggctcagccgttagagagcactgggtgtt 101
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 874 ctaagaagcagatttctggggctggagagatggctcagccgttagagagcactgggtgct 815

                                                                       
Query: 102 cttccagaggtcttgagttcattgccagcactcacatggtggcttgtaactgtctataac 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 cttccagaggtcttgagttcattgccagcactcacatggtggcttgtaactgtctataac 755

                                                                       
Query: 162 tggagtctcatgggatcagatgccctcctctggtgtgcaaaacacacctatgcataaact 221
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 754 tggagtctcatgggatcagatgccctcctctggtgtgcaaaacacacatatgcataaact 695

                                                                       
Query: 222 aaatacataatttaaaaaatttttctgcagtaggcattgtttaattgtgactgaattttc 281
           ||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||
Sbjct: 694 aaatacataatttaaaaaacttttctgcagtaggcagtggttaattgtgactgaattttc 635

                                                                       
Query: 282 ttgaagtgttttgcttttcccaatatatacttttttgttgtatttataagttcaactcaa 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 ttgaagtgttttgcttttcccaatatatacttttttgttgtatttataagttcaactcaa 575

                                                                       
Query: 342 accacagataaattaaaaacaatcatgggaatttaaaaacacattcctttcttcagattt 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 accacagataaattaaaaacaatcatgggaatttaaaaacacattcctttcttcagattt 515

                                                                       
Query: 402 aaattttatcttaacatctcaactaatttgtactagtatataaaaaatcccagaggcaga 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 aaattttatcttaacatctcaactaatttgtactagtatataaaaaatcccagaggcaga 455

                        
Query: 462 ggctggagaaatg 474
           |||||||||||||
Sbjct: 454 ggctggagaaatg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no363_l05.g1 MSMg01no363_l05.g1 CHROMAT_FILE:
MSMg01no363_l05.g1 PHD_FILE: MSMg01no363_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:30 2005
         (449 letters)



>mm_chr18_53341310_53342158
          Length = 849

 Score =  853 bits (441), Expect = 0.0
 Identities = 447/449 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctagtgaatgcatctggggctagatttcttttaattagaagatttttattactgtttaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctagtgaatgcatctggggctagatttcttttaattagaagatttttattactgtttaa 260

                                                                       
Query: 61  gtcttgcttctttcagacatggttacatcatttatttcttagtttaacttcagtaagtca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcttgcttctttcagacatggttacatcatttatttcttagtttaacttcagtaagtca 320

                                                                       
Query: 121 tatgcatttagaagttaatttccttttgatttcaaatttagtagaatataagttttaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgcatttagaagttaatttccttttgatttcaaatttagtagaatataagttttaaat 380

                                                                       
Query: 181 tttttaatttattttttattagatattttccttatttacatttcaaatgttatccccttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttttaatttattttttattagatattttccttatttacatttcaaatgttatccccttt 440

                                                                       
Query: 241 cctggtatcccctccaaaaaccaccctatcccatccccccactccccctgctccccaacc 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctggtatcccctccaaaaaccaccctatcccatccccccactccccctgctccccaacc 500

                                                                       
Query: 301 cacccactccagcttcctggccctggcattctcctatactggggcatagaactttcacag 360
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 501 cacccactccagcttcctggccctggcattcccctatactggggcatagaactttcacag 560

                                                                       
Query: 361 gaccaagggcctcttctcccattgatgaccaactaggacatcctctgctgcatatgcatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaccaagggcctcttctcccattgatgaccaactaggacatcctctgctgcatatgcatc 620

                                        
Query: 421 tagagtcatgtaattcctttttttgtttt 449
           |||||||||||||||||||||||||||||
Sbjct: 621 tagagtcatgtaattcctttttttgtttt 649


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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