TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCACGGGAAACCGATTTGTCAGAAGGAAAACTGTGGAAAGGTGGCATAGA
CATCAAAGGGCGGTGAACTGCTGAAGAAACCATGAGCGAATAGCGTCAGG
CTTAACGTGCTCTGTGGGGTAAATCTTTTAACAGATTTGTCTTCTAAAAG
TCTTCATGGTAAGCAACCCAGGAAGCTAAGCCCCGGTGATTAGCTCGCCT
CTCTGTTCTTTGCTGTAGTCCAGATCATTAGAGCTGATAAGCAGAGCTGA
AGGCTCCTGATAACCATCATCTGGTCTCAGGGATGCAGAATTCAGAATTC
AGACCCGGTGACAGAAACTCTACCTACCTACACACATAAAGCCTGACATT
TGACTACAATGGGGCTCCGAAATGATGCAGAAAGCCATTTAGTTGGTTTC
TTTACGTACGTTTCCCATAAGTTAGTGCTGCAAGATCATGTTTTGAAATT
CCATTTCCTGCTGGACATATTCATTCTCAAATGGTCTGCCCACACAAGTG
ACAATTTGGAGACTCTCCAAGCGGGACACAATAGCGAGGAAAGGAAATGA
AGAGAGTGGGAGAAGGAAGGGGCGGGGCGTCAGAGTTTTCACTGCCTGCT
TTACGCTCCCACTTGTTTAACAGGCTGTAATGAAAAACACTGCTTCGTTA
GATGTATTAAAGTTGAGAGCAAAGTTGCTGTACTC

NNNCCCTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTCTAGAGAGAATTCACTCTTTTTGGGTAGAGG
GTATGGATGTTATTAGAAGATAAGGACATTGTGTTCGTTACTTTTCTTAT
TAATTGAAGGAGGAAGGGTTTATTTTGGCTCAAGGTTCAGGGTGACTGGA
GCTAAAAGCTTGACAGATGAGCTAGCTTCCTGCATCGCAGCAGGAACAAG
AGGTATCTTTCCTCACGTCATGATGGACCAGGTCAAGAATTCATCAACTT
ATCACAAACCTGAGGTTGTTTTGGATGATTAACCTCAANTGAGGAAAATG
CCTTCATCAGATTGCTTATAGGCACGCCTGTAGAGCATTTCTAAATTAAC
AACTGATGGGAGAGAGCCCAGCCCACTCTGGGTAGTGCCATCCCTGGGTT
AGTGGTCCTGGTGCTTTATGGAAGCAGGCTGGCTAAACCATGGGAGTAAG
TCAGTAAGCAGCATTCTTCCATAGCCCTATACTTCAGTTCCTGCCCCAGG
ATCCTGCCTTCCTTGAGATCTTGCCTTACACCTCTCTCAATGATAGACTA
TGATAGGGATGTATTCTCCAAAACAACCCTTTTCCTCCCAAGAAGTTTTT
TTTTTTTTTTTTTACCCCAGCCATATTATATCAATCCAGGACTTTCCTGA
AACAGTTATCCCGTTGGGATGAAATCTTGTTTTTATCCTATCCTCAAAN

Query= MSMg01no363_n12.b1 MSMg01no363_n12.b1 CHROMAT_FILE:
MSMg01no363_n12.b1 PHD_FILE: MSMg01no363_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:59:41 2005
         (586 letters)



>mm_chr18_49801247_49802234
          Length = 988

 Score = 1062 bits (549), Expect = 0.0
 Identities = 574/583 (98%), Gaps = 2/583 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacgggaaaccgatttgtcagaaggaaaactgtggaaaggtggcatagacatca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacgggaaaccgatttgtcagaaggaaaactgtggaaaggtggcatagacatca 264

                                                                       
Query: 65  aagggcggtgaactgctgaagaaaccatgagcgaatagcgtcaggcttaacgtgctctgt 124
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagggcggcgaactgctgaagaaaccatgagcgaatagcgtcaggcttaacgtgctctgt 324

                                                                       
Query: 125 ggggtaaatcttttaacagatttgtcttctaaaagtcttcatggtaagcaacccaggaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggtaaatcttttaacagatttgtcttctaaaagtcttcatggtaagcaacccaggaag 384

                                                                       
Query: 185 ctaagccccggtgattagctcgcctctctgttctttgctgtagtccagatcattagagct 244
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctaaaccccggtgattagctcgcctctctgttctttgctgtagtccagatcattagagct 444

                                                                       
Query: 245 gataagcagagctgaaggctcctgataaccatcatctggtctcagggatgcagaattcag 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 gataagcagagctgaaggctcctgataaccagcatctggtctcagggatgcagaattcag 504

                                                                       
Query: 305 aattcagacccggtgacagaaactctacctacctacacacataaagcctgacatttgact 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattcagacccggtgacagaaactctacctacctacacacataaagcctgacatttgact 564

                                                                       
Query: 365 acaatggggctccgaaatgatgcagaaagccatttagttggtttctttacgtacgtttcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 565 acaatggggctccgaaatgatgcagaaagccatttagttggtttctttaagtacgtttcc 624

                                                                       
Query: 425 cataagttagtgctgcaagatcatgttttgaaattccatttcctgctggacatattcatt 484
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 cgtaagttagtgctgcaagatcatgttttgaaattccatttcctgctggacatattcatt 684

                                                                       
Query: 485 ctcaaatggtctgcccacacaagtgacaatttggagactctccaagcgggacacaatagc 544
           |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct: 685 ctcaaatggtctgcccacacaagtgacaatttggagacgctccaagtgggacacaatagc 744

                                                      
Query: 545 gaggaaaggaaatgaagagagtgggaga--aggaaggggcggg 585
           ||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 745 gaggaaaggaaatgaagagagtgggagagaaggaaggggcggg 787


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 988
Length adjustment: 10
Effective length of query: 576
Effective length of database: 978
Effective search space:   563328
Effective search space used:   563328
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)