BAC Information

Click to search

BAC

Clone NameMSMg01-364B24
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364B24.T7 (MSMg01no364_b24.b1)MSMg01-364B24.TJ (MSMg01no364_b24.g1)
ACCAG472398AG472399
length786784
length of high quality
(start - end)		350 (53 - 402)323 (82 - 404)
definitionCHROMAT_FILE: MSMg01no364_b24.b1 PHD_FILE: MSMg01no364_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:06 2005CHROMAT_FILE: MSMg01no364_b24.g1 PHD_FILE: MSMg01no364_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NNAACAATTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTGCTTCCAATGATAGGAAGAGCCGACATCGAAGGATCA
AAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTG
TGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAGGTCAGAAGGAT
CGTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAA
GCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCT
CGCCTTAGGACACCTGCGTTACCGTTTGACAGGTGTACCGCCCCAGTCAA
ACTCCCCACCTGGCACTGTCCCCGGAGCGGGTCGCGCCCGCCCGCACGCG
CGGTACGGACGCTTGGCGCCAGAAACGAGAGACCCTCCGGGCTTGCCCCC
CCCGCTTTCCCGGGTCAGTGGAAAAAATATCATAATGAATGGTCTTTCTC
TAGTTGTTCCTCTAATCTTTTTTTGTACTTTTCTTATACCCTTCATCTTA
TTTGCACTATCTAATATTCTTAATTCTCACACTATGATTATTTCCTTCTT
CTCCTCAATTCTTCTCCACTTTGCGTCTATTTTTTTGTTTGGTCTGTTCC
TCCCCATCCCTATTTATATTTTTTTCTCTTCATTCTACATCCGTTTATAT
GTCTTGCTTTTTTTGTCTATTCTCCTTTTATTTAGATCTTTTTTTTACCT
TATTCATATACTTTTCTCCCTTTCATCATCTTTTGT

NNTTTAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTGAACTCACTGTCCTTT
CAGGTCCACATTTGCTCTGGCTCTGGCAACTGACTGAACCAAACAATTAG
GCTCATACCTAGAACTTTGGAAATGGTAATGGAGTTGATAACACACCCTA
ACAGAAAGAGGAAGGCTCCACTCACTAGTACACTTTCACTAGAAGCCTCG
CCCTGTCAGCAGTTTAGGAATTTGTAAAGCCAATCTGGACAATATTTAAA
TGGTTTGGAATTTCTACTTCATGTTTAATTTTTTTTTTTTTTTTTTTTTT
TTGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTG
TAGACCAGGGTGGGCTCGAACTCAGAAATACACCTGCCTCTGCCTCCCGA
GTGCTGTGATTAAAGGCGTGGCCCCCCACCCCCGGCCCCCTGTGTATTGG
TTTATTATACCTTTTATTAACTTTTTATAAAAATTGTTGAAGGCCTGAAT
AAAGGGGTCATCCCTCTAAAATATCTGAATTTTTTCCGTCTAGCGCTGGA
TCTCTTATCTTTTNNNACNNATNTNNACNNNNNNNNNNTAANNCCATTAT
TTTTTCTTTNTTTTATTTAAATTTATTTATTCTTTCTCTACCCCCCTTTT
TTTAATACCCTCTACTCCCTCATTATCATTAATATTACTTCTTATTCTAA
TTTCCCTTTTTATTTTTATATATTATTATCATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_b24.g1 MSMg01no364_b24.g1 CHROMAT_FILE:
MSMg01no364_b24.g1 PHD_FILE: MSMg01no364_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:06 2005
         (323 letters)



>mm_chr18_40467473_40468194
          Length = 722

 Score =  387 bits (200), Expect = e-112
 Identities = 236/248 (95%), Gaps = 1/248 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 447 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 388

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 387 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 329

                                                                       
Query: 121 cagaaagaggaaggctccactcactagtacactttcactagaagcctcgccctgtcagca 180
           ||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||
Sbjct: 328 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 269

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 268 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 209

                   
Query: 241 tgtttaat 248
           ||||||||
Sbjct: 208 tgtttaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 722
Length adjustment: 9
Effective length of query: 314
Effective length of database: 713
Effective search space:   223882
Effective search space used:   223882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |