BAC Information

Click to search

BAC

Clone NameMSMg01-364G05
Chromosome18 (Build37)
Map Location 48,109,279 - 48,109,766
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd10, EG628438, LOC667120, Sema6a, LOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284
Downstream geneLOC100042301, EG433182, LOC383326, LOC100042323, LOC545470
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364G05.T7 (MSMg01no364_g05.b1)MSMg01-364G05.TJ (MSMg01no364_g05.g1)
ACCAG472598AG472599
length775757
length of high quality
(start - end)		493 (44 - 536)415 (75 - 489)
definitionCHROMAT_FILE: MSMg01no364_g05.b1 PHD_FILE: MSMg01no364_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:29 2005CHROMAT_FILE: MSMg01no364_g05.g1 PHD_FILE: MSMg01no364_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGG
AATTCTGTCCACCCCTGAATGATCTGCCTTCTCTTTTATAATTAAATATT
CACCATAGGTGAATGCAAACTTCCAGTCAAGCTTTTCTGGAACAACTATC
CCCAGTTCTCCCACTGTTGGTTGTATTCTATGACATCATGGTTCCTTTTC
ACAGCATTTACAAATAATACATCTTTAGTCATTATTTGCTTACATGTTTG
TTGTTCCCGAAATGGATACTTTATAATGAAAAAGATCTATGTCTTATTCA
ACACTGTCTCTTCAAAATCTGGGAGCTGGATGATGACCATAGTTTGTTTT
TACTATTTATAAACATGTATCTCCTGCTCAATGAGTCTCAGTACTTAGAC
AAGGGATGGGCTCAAGGTAGATTCTCCTTTTATCTGTTAGATACATTAAG
TCAAGATAGACATTTCTAACTCAGATTCCCAAAAGAGAAACTTCCTGGTT
CTTTGAGACAGGATTCCAAAAGGAGACATTTTGAATCCTCTTAATTGTTA
TATTACTTTAGANATTATCAAGAGGCTCCCCTCCTCCACGCCATTTGGTC
CCCAGCAGAATCCAAATTGTCTTTAAACTCTAAACATCTCCTAATTCTTG
TGCCCTAAAGAGAAAAATGAAGGGTTTCCTGGGCCTTTCGGTTTCTCCTG
GAGAAATAAAAAATTTTTACTTCTCTTTCTGAAAAAATGGAGTTTTGGAA
ACCACATTTCTATTTGATTTATAGG

CAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATATTCTATTTCATTTATCTGGGTC
ATCATTTATTATTATGTTGGCATAACTTTGATAACCATGACCTTATGATC
CTGAATTAAAGCAACATTACTTTTCTTTTTTATTGGATATTTTCTTTATT
TGCATTTCAAATGTTATCCCCTTTCCCAGTTTCCCCTCCAGAAACCTCCT
ACCCCATCTCCCCCGCCACCGCTTCTATGAGGGTGATCCCCCACCCACCC
ACTCCTGCCTCCCTGCCCTGGCATTCCCCTACATTGGGGCATAGAGTCTT
CACAGTACCAAGTGTTTCTCCTCCCATTGATGTCTGACAAGTCCATCCTC
TGCTACATATACTGCTGGAGCTATGGGTCCCTCCATGTGTACTATTTGGT
TGATGGTTTAGTCCCTGAGAGCTCTAGGGGTTGGGGTGGGGGTCTGGTTT
GTCCCNTCTTCTTCCTCTTTCTTCTTTTTTTTTCTCCCTTTCTTTCTTCT
TTCTTCTGTTTTTGTCTTTTTCCTTCTCTTTTTTTCCCGCTCCTCTGCCT
CCTTCCTTTTTTCTTCTCTTTTTTCTTTTTTTCCTTTTTTTTCTTTTTTT
CTTCCCTCTTTTTGCTTTTTTTTTTGCCTTTCTCTTCCTCCCCTCCCTTT
CCTCTTGTGTTCTGGTCCTTCCTTTCTTTCCTTGTTTTTTCTTTTCTATT
CTATCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_g05.b1 MSMg01no364_g05.b1 CHROMAT_FILE:
MSMg01no364_g05.b1 PHD_FILE: MSMg01no364_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:29 2005
         (493 letters)



>mm_chr18_48109074_48109966
          Length = 893

 Score =  913 bits (472), Expect = 0.0
 Identities = 484/488 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctgtccacccctgaatgatctgccttctcttttataattaaatattcaccatag 65
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 206 ggaattctgtccacccctgaatgatctgccttctgttttataattaaatattcaccatag 265

                                                                       
Query: 66  gtgaatgcaaacttccagtcaagcttttctggaacaactatccccagttctcccactgtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gtgaatgcaaacttccagtcaagcttttctggaacaactatccccagttctcccactgtt 325

                                                                       
Query: 126 ggttgtattctatgacatcatggttccttttcacagcatttacaaataatacatctttag 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ggttgtattctatgacatcatggttccttttcacagcatttacaaataatacatctttag 385

                                                                       
Query: 186 tcattatttgcttacatgtttgttgttcccgaaatggatactttataatgaaaaagatct 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcattatttgcttacatgtttgttgttcccgaaatggatactttataatgaaaaagatct 445

                                                                       
Query: 246 atgtcttattcaacactgtctcttcaaaatctgggagctggatgatgaccatagtttgtt 305
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atgtcttattcaacactgcctcttcaaaatctgggagctggatgatgaccatagtttgtt 505

                                                                       
Query: 306 tttactatttataaacatgtatctcctgctcaatgagtctcagtacttagacaagggatg 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tttactatttataaacatgtatctcctgctcaatgagtctcagtacttagacaagggatg 565

                                                                       
Query: 366 ggctcaaggtagattctccttttatctgttagatacattaagtcaagatagacatttcta 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ggctcaaggtagattctccttttatctgttagatacattaagtcaagatagacatttcta 625

                                                                       
Query: 426 actcagattcccaaaagagaaacttcctggttctttgagacaggattccaaaaggagaca 485
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 626 actcagattcccaaaagagaaacgtcctggttctttgagacaggattccaaaaagagaca 685

                   
Query: 486 ttttgaat 493
           ||||||||
Sbjct: 686 ttttgaat 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |