BAC Information

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BAC

Clone NameMSMg01-364K04
Chromosome18 (Build37)
Map Location 71,122,091 - 71,309,013
singlet/doubletdoublet
Overlap genenone
Upstream geneCcdc68, Rab27b, 2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream geneDcc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-364K04.T7 (MSMg01no364_k04.b1)MSMg01-364K04.TJ (MSMg01no364_k04.g1)
ACCAG472784AG472785
length765768
length of high quality
(start - end)		439 (80 - 518)508 (75 - 582)
definitionCHROMAT_FILE: MSMg01no364_k04.b1 PHD_FILE: MSMg01no364_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:49 2005CHROMAT_FILE: MSMg01no364_k04.g1 PHD_FILE: MSMg01no364_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:00:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,308,580 - 71,309,013)(71,122,091 - 71,122,598)
sequence
GTTTTATTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGA
ATCCGCGGAATTCATCTTAAACTCCCAAGCATGGAATGAGAGCTTAACCA
TGTACCTAGTGTGGCAGAATATTAAGTAAACCACAGTTTCTTTCAAGTCA
CAGATTTTCTGCAAAAATGAACAAGAGAGGTGCCTGACAGCCCCTTCTCC
TTGTAATAGTGGTGAAGGGAGGTTCCTATAAAATTCTGCATATCACTTTT
GCAATTTTTGAGACTCAAGTCATACCCTATGTTTGACCACATTCTTGTGG
GCAAGAGAGAAAACATACCAGGGTGCTCAATTAATGTCAGAGGACAGTTT
ACAGGAGTCCTTTGATTCTCTTCTTCCACCCTATGGTCTCCAGGAATTGA
ACTTGAGTTGTCCATTAGATTGGCTGCAGAATTACTGCGACATCTTGCCA
GCCCACTCTGATTCTTGGGTTCATGTCATGATTCTGGTCTCTTATCTTCT
TAAAACTGATTTCTAAGATCTTTANAATCCAGGTTGTTGCTGGCTGCAAC
AACTGGTATTCTTGATCATCCAACCTCTCCTGGGGGGCTGCCTAACAAAA
GCATGATGAATAGCTTTCCTATAAATGATTTTTGTTGAAGTTTTCCGGTA
TTTACCATAATTTACGGAAAGTTTGTTTTTGTTTCACCTAATGGAAAAAA
ATATACCATCCGTTTGATATTTTATATCCACATTTCCCTCTACTTCTTCT
CTCTGCTTAAATTTA

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXACTGGAAGATCACTTCACCCTGTTCA
TCAAAATGTGGCCTTTAGGTTTGACCCTCCATCCGTCTATATTTTAAGTT
TTTAAATCACTATTTCTGTTAGTCACTATTCCTGTTTTATGAGTAGACAT
TTTGGAAAGTATAATTTTAAAATAATAATTTATGGACTGCTATCTAGTTT
AGAATATGTGCAGTAACAGTTCTGAGTCATAGCCCATGGCACAAAATAGT
TGTTTAATAAACTAATAGACATCTGAAGACCAAGTGAATTATTAAGGATT
CTCCGGCATGCTGCTTTGGTAAATGAGTATGAGGAAATAAATGGACTTGT
TTCTTTTTGTAGTTAAGGTTTCTAGCACATCCTTAATTTCTTTTGATTTT
TTATTCTCCCTTTATAACATTTGGAGATTCTCTAGTGGCTGAGACCTTTT
ATGGATCACGTGCCAGCCCATATGGCCATTTGATGGGTGAGGCCATCTGG
TGCCAACTTGACAGCTGTGATCAGGTGCAAGTTTAACTCTAAAGTTTTTC
CTGTGCTTTATAACCTGTTCCTTGGAAGGCATGTAAGAGAGATGTTTTAT
GTTGCTACCTTGGTTTCAAACCCCAGTTTATTCCTTTACTATTCTGGGGG
ATGCTTATTAATTTCTTGGGACATGGTGATTTTTTTTCGGTCCCTGGCTC
TCATCTCTCTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no364_k04.b1 MSMg01no364_k04.b1 CHROMAT_FILE:
MSMg01no364_k04.b1 PHD_FILE: MSMg01no364_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:49 2005
         (439 letters)



>mm_chr18_71308580_71309418
          Length = 839

 Score =  785 bits (406), Expect = 0.0
 Identities = 427/434 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catggaatgagagcttaaccatgtacctagtgtggcagaatattaagtaaaccacagttt 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 catggaatgagggcttaaccatgtacctagtgtggcagaatattaagtaaaccacagttt 375

                                                                       
Query: 61  ctttcaagtcacagattttctgcaaaaatgaacaagagaggtgcctgacagccccttctc 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 374 ctttcaagtcacagattttctgcaaaaatgaacaagaggggtgcctgacagccccttctc 315

                                                                       
Query: 121 cttgtaatagtggtgaagggaggttcctataaaattctgcatatcacttttgcaattttt 180
           ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 314 cttgtaataatggtgaagggaggttcctataaacttctgcatatcacttttgcaattttt 255

                                                                       
Query: 181 gagactcaagtcataccctatgtttgaccacattcttgtgggcaagagagaaaacatacc 240
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gagactcaagtcataccctatatttgaccacattcttgtgggcaagagagaaaacatacc 195

                                                                       
Query: 241 agggtgctcaattaatgtcagaggacagtttacaggagtcctttgattctcttcttccac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 agggtgctcaattaatgtcagaggacagtttacaggagtcctttgattctcttcttccac 135

                                                                       
Query: 301 cctatggtctccaggaattgaacttgagttgtccattagattggctgcagaattactgcg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 cctatggtctccaggaattgaacttgagttgtccattagattggctgcagaattactgcg 75

                                                                       
Query: 361 acatcttgccagcccactctgattcttgggttcatgtcatgattctggtctcttatcttc 420
           | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  atatcttgccagctcactctgattcttgggttcatgtcatgattctggtctcttatcttc 15

                         
Query: 421 ttaaaactgatttc 434
           ||||||||||||||
Sbjct: 14  ttaaaactgatttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no364_k04.g1 MSMg01no364_k04.g1 CHROMAT_FILE:
MSMg01no364_k04.g1 PHD_FILE: MSMg01no364_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:00:49 2005
         (508 letters)



>mm_chr18_71121891_71122798
          Length = 908

 Score =  951 bits (492), Expect = 0.0
 Identities = 504/508 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actggaagatcacttcaccctgttcatcaaaatgtggcctttaggtttgaccctccatcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 actggaagatcacttcaccctgttcatcaaaatgtggcctttaggtttgaccctccatct 260

                                                                       
Query: 61  gtctatattttaagtttttaaatcactatttctgttagtcactattcctgttttatgagt 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 gtctatattttaagtttttaaatcactgtttctgttagtcactattcctgttttatgagt 320

                                                                       
Query: 121 agacattttggaaagtataattttaaaataataatttatggactgctatctagtttagaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacattttggaaagtataattttaaaataataatttatggactgctatctagtttagaa 380

                                                                       
Query: 181 tatgtgcagtaacagttctgagtcatagcccatggcacaaaatagttgtttaataaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgtgcagtaacagttctgagtcatagcccatggcacaaaatagttgtttaataaacta 440

                                                                       
Query: 241 atagacatctgaagaccaagtgaattattaaggattctccggcatgctgctttggtaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagacatctgaagaccaagtgaattattaaggattctccggcatgctgctttggtaaat 500

                                                                       
Query: 301 gagtatgaggaaataaatggacttgtttctttttgtagttaaggtttctagcacatcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagtatgaggaaataaatggacttgtttctttttgtagttaaggtttctagcacatcctt 560

                                                                       
Query: 361 aatttcttttgattttttattctccctttataacatttggagattctctagtggctgaga 420
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtttcttttgattttttattctccctttataacatttggagattctctagtggctgaga 620

                                                                       
Query: 421 ccttttatggatcacgtgccagcccatatggccatttgatgggtgaggccatctggtgcc 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 ccttttatggatcacgtgccagcccatatggccatttgatgggtgaagccatctggtgcc 680

                                       
Query: 481 aacttgacagctgtgatcaggtgcaagt 508
           ||||||||||||||||||||||||||||
Sbjct: 681 aacttgacagctgtgatcaggtgcaagt 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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