Query= MSMg01no365_g08.b1 MSMg01no365_g08.b1 CHROMAT_FILE:
MSMg01no365_g08.b1 PHD_FILE: MSMg01no365_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:53 2005
(460 letters)
>mm_chr18_63184299_63185157
Length = 859
Score = 799 bits (413), Expect = 0.0
Identities = 448/465 (96%), Gaps = 11/465 (2%)
Strand = Plus / Plus
Query: 1 atacggcatatgtgatacaggtgctgtagtccaaattaaagtgtactcgtcaagaaatta 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atacggcatatgtgatacaggtgctgtagtccaaattaaagtgtaatcgtcaagaaatta 260
Query: 61 cagtttaacttcaaacgacccacaatttggaatatatagcagaaaccattctgagacaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtttaacttcaaacgacccacaatttggaatatatagcagaaaccattctgagacaac 320
Query: 121 tttatgtatcaggaaaaactcatcagctgccttgtgcatcaaatttggtgtatttcttcg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatgtatcaggaaaaactcatcagctgccttgtgcatcaaatttggtgtatttcttcg 380
Query: 181 atttaaattatagatagtaataaatatactttaagctaacaaatatgcttccgaaatatt 240
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 atttaaattataaatagtaataaatatactataagctaacaaatatgcttccgaaatatt 440
Query: 241 cttctagtt-----atttttatttatacagaatagctgccttacctaatcgtttgatgtg 295
||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttctag--gagcaat----atttatacagaatagctgccttacctaatcgtttgatgtg 494
Query: 296 agatatgttctctgactatgccaaatgtaaatgttactggactgttacagtgtgtcctca 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 agatatgttctctgactatgccaaatgtaaatgttactggactgttacagtgtgtcctca 554
Query: 356 taacagtctctttttcattttatctattttagaaccaggaaagtcttcccaattgatttt 415
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 555 taacagtatctttttcattttatctattttagaatcaggaaagtcttcccaattgatttt 614
Query: 416 tcctttagagcactcccaatttcacactgcattgttctacagtaa 460
||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 615 tcctttagagcactcccaatttcacactgtattgttctacagtaa 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space: 382050
Effective search space used: 382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_g08.g1 MSMg01no365_g08.g1 CHROMAT_FILE:
MSMg01no365_g08.g1 PHD_FILE: MSMg01no365_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:53 2005
(473 letters)
>mm_chr18_63362813_63363685
Length = 873
Score = 855 bits (442), Expect = 0.0
Identities = 445/446 (99%)
Strand = Plus / Minus
Query: 28 acacacacacacacacacacacacacagcaaatagaaagaaaaacaacaaaaattcccac 87
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 700 acacacacacacacacacacacacacagcaaatagaaagaaaaacaacaaaaagtcccac 641
Query: 88 taagaatggttaaatttttatatgaaaagattaatagttacctaaatgactgttcatcac 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 taagaatggttaaatttttatatgaaaagattaatagttacctaaatgactgttcatcac 581
Query: 148 ttgtataaaaggaaaaaaaatccctttgaaaataggaactcacagagcccattacagtta 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 ttgtataaaaggaaaaaaaatccctttgaaaataggaactcacagagcccattacagtta 521
Query: 208 tagacacatgcatattcagacagctagatgacacacaagtagagaaaagagtggaacagt 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tagacacatgcatattcagacagctagatgacacacaagtagagaaaagagtggaacagt 461
Query: 268 tactgtttggagactgtgcatatctcagatagagagaaggagagttgccgttggtggcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tactgtttggagactgtgcatatctcagatagagagaaggagagttgccgttggtggcca 401
Query: 328 ggcacacctgcagtagcgattgggacacttactatccgtggccatccacatctcagattc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ggcacacctgcagtagcgattgggacacttactatccgtggccatccacatctcagattc 341
Query: 388 tcacaggttatgggcagcttgagctttggagagcagtctgtcaagttcctgcttttatca 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tcacaggttatgggcagcttgagctttggagagcagtctgtcaagttcctgcttttatca 281
Query: 448 ttacagcctagtgcagagaatatgag 473
||||||||||||||||||||||||||
Sbjct: 280 ttacagcctagtgcagagaatatgag 255
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space: 399569
Effective search space used: 399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
