BAC Information

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BAC

Clone NameMSMg01-365G21
Chromosome18 (Build37)
Map Location 40,467,673 - 40,467,925
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365G21.T7 (MSMg01no365_g21.b1)MSMg01-365G21.TJ (MSMg01no365_g21.g1)
ACCAG473386AG473387
length767740
length of high quality
(start - end)		521 (36 - 556)435 (73 - 507)
definitionCHROMAT_FILE: MSMg01no365_g21.b1 PHD_FILE: MSMg01no365_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:55 2005CHROMAT_FILE: MSMg01no365_g21.g1 PHD_FILE: MSMg01no365_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:01:56 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCTGA
ACTCACTGTCCTTTCAGGTCCACATTTGCTCTGGCTCTGGCAACTGACTG
AACCAAACAATTAGGCTCATACCTAGAACTTTGGAAATGGTAATGGAGTT
GATAACACACCCTAACAGAAAGAGGAATGCTCCACTCACTAGTACACTTT
CACTAGAAGCCTCGCCCTGTCAGCAGTTTAGGAATTTGTAAAGCCAATCT
GGACAATATTTAAATGGTTTGGAATTTCTACTTCATGTTTAATTTTTTTT
TTTTTTTTTTTGAGACAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAA
CTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATACACCTGCCTCT
GCCTCCCGAGTGCTGTGATTAAAGGCGTGCACCACCACGCCAGGCCCCAT
GTTTAATGTTTAGTAAACATTTAATAAACATTTAATAAACATTGTGAAGG
TCTGAAGAGATGGATCAGCAGTTAAGAGCATTGACTTTTCTTGCAGAGGT
CCTGAGTTCAATTCCCAGGAATCACATGGTGCCTTTGGAATCCGATGCAC
ACTTTTGGTGGGTGTTGGAAGACAGCTGCATCGCACTCCCATATTTATAC
AAACATATAATATTCCCAAAAAAGGAAAACCAAAATTGTGGATCACATTG
ATCACCTTAATTCTCATTTTGTGNACCGGGTTTTCCCCCCGCCCGTGTTT
TCTTCTTCTGTATCCAG

CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTAGGAACATGTCCTTGTTGTATACTT
ATCCTGCTCCCATTAATTGGGGTACTCTACTGTGGCAAGGGTACTTGCCA
TGTCTTAACTTGAAAACCAGAAAGTCAGTTGTGCATGTACAAGTCTCTTT
CTTCCAAGTAAGATGTCAGTTCCCAGGGAGGCCTCGAGAACTTATACTTT
ACTCACTCACACCCTACTCAAAATAGAAGTCTGGTTCGAAGTAGTCTCTG
CACTGAATCGGTGGTGCGGGTGTCTCTCTTTTGTTGGGGTGCGGGGGTCC
GTCCCCAGGGCAGCTTCTAAGAGCAAATGCCAGAAAAGTGTATACATGGG
TTTGTGCAGGAAATGCTGCTGGGTGGTCAGTTTGGGTCCAAGCCTATTGC
AGATAACTATAGAACAAAGGAAGCTTCTATTCTGATTGGTTTCCGAGGAC
ACATCCAACAAGAATATGTAGTCAATTCTGGCAATAATGGCAGAAACAAG
CTATGAGAAAGTGTCCTTATAATAGTAGTTAACAGCACCAAATGGCAGGC
TAGCCAGGTAAGAGGTTACCTAGGGCCTTATCTATCTGAAGGAAGGCTTC
ACATTCCATCCAGGCCTTATATTTTTACCATACTTAACAGCCCCCAGTTT
TGCCTCTGGAACATCCCCAAGGATGGTTCAAACAATGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_g21.b1 MSMg01no365_g21.b1 CHROMAT_FILE:
MSMg01no365_g21.b1 PHD_FILE: MSMg01no365_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:01:55 2005
         (521 letters)



>mm_chr18_40467469_40468388
          Length = 920

 Score =  391 bits (202), Expect = e-113
 Identities = 241/254 (94%), Gaps = 1/254 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgact 64
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 457 gaattctctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgact 398

                                                                       
Query: 65  gaaccaaacaattaggctcatacctagaactttggaaatggtaatggagttgataacaca 124
           ||||||||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||
Sbjct: 397 gaaccaaacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacaca 339

                                                                       
Query: 125 ccctaacagaaagaggaatgctccactcactagtacactttcactagaagcctcgccctg 184
           | |||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||
Sbjct: 338 ctctaacagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctg 279

                                                                       
Query: 185 tcagcagtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttct 244
            |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct: 278 ccagcagtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttct 219

                         
Query: 245 acttcatgtttaat 258
           ||||||||||||||
Sbjct: 218 acttcatgtttaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 920
Length adjustment: 10
Effective length of query: 511
Effective length of database: 910
Effective search space:   465010
Effective search space used:   465010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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