BAC Information

Click to search

BAC

Clone NameMSMg01-365M19
Chromosome18 (Build37)
Map Location 44,484,983 - 44,485,391
singlet/doubletsinglet
Overlap genenone
Upstream geneDpysl3, LOC100042074, LOC100042807, Jakmip2, Spink3, Scgb3a2, Gm94, Spink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r
Downstream geneMyot, Dcp2, Mcc, LOC100042883, Ythdc2, LOC626309, LOC225457, LOC100042900
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-365M19.T7 (MSMg01no365_m19.b1)MSMg01-365M19.TJ (MSMg01no365_m19.g1)
ACCAG473668AG473669
length797750
length of high quality
(start - end)
358 (32 - 389)410 (57 - 466)
definitionCHROMAT_FILE: MSMg01no365_m19.b1 PHD_FILE: MSMg01no365_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:23 2005CHROMAT_FILE: MSMg01no365_m19.g1 PHD_FILE: MSMg01no365_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:02:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATTGCGAGAGGATCCGCGGAATTCTTTGTT
TACCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCA
CCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTA
GGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATT
GACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTATGTCCCATT
TGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAAT
TTTTCCCCTGTGTTTCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTA
TAAGTTTCAGTGTCTCTGGCTTTATGTGAAGTTCCTTGATCTACTTACAT
TTCACCTTACTCCTTGGACATACATATGGATCGATTCGTATTCTTCTTCC
CGATTACACCCCGTTGTGCCCGCACCCTTTGTTGCATATGTCGTCCTTTC
TTCCCTTGGACTGTTTTTCTTTCCTTCGTTTTTTTATCCCCCGCACCCCC
TTTTCTTCTTTCCTTTTCTCCTTCCTTCCCCCCCTTTTTCACTTCCCTTT
TTCCTTTTTCCTTCCCCCTATTCCACTATTCTTTGTTCCCCTTTCCCCTT
TCTCCTTATTTTTTTTTCCTCCGCCTTTTTCGCTTCTCTTCCCCCGCCCC
TTTCTTTTCTTCTCCCTTTTTTTCTCTTTTTCTCCCGCTTTTTTTATCCC
CTTCTTTCTCTCCTCCGCACGTTTTATCCCCTCCTCTTTCTTCCACC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXACCTTGTTAGCTACATCAGTTGAGAACTTTTGTGGCTGCCAGAG
CGTCTGGCCTCTGAGTGCTGAACTCTAGAGAGAAACCCTATAAAGAGCAG
AGAAACTGGCCGTGGCAGGAAGACACAAATGTAATGCTTCCCCCCATGGG
AAGAGGAGGATTAAGGGAGAGAGTGTGTGGGAAACTTCTGGAACTTCTTG
TAAGAAACACACCTTATAAATAAATAGAAGGTCAGCCAGTACAAGAGGCT
AAAATTTCCTCTAACCTCCCTGACATGCCTCAAAGGAGAAGTTGGAAAAC
ATCAGCCAAAAAAGTGTTAGTCCCAAGTGAGAGTTGGGGACTTAGATTTT
GTATCTGCTTCTTTTCCATGAGGAAAAAAAAATCCAACTTTTAGATAACG
GGGATGTTAAATTGTGGTCCCTTAATATTTTAGATGGTTCCTGTTCTACC
GTGAACAATCAGAATTATAACGGAAGACTCCATTTATCAGATGGTATTCT
CTCATTCCCTGGTGTGGTAACCAGGTTTGAGAGTGATTTCTTAATCCTTA
TGTTCGGGCCCCCAAAGTAGGATTTATATGTGTTGTCTTAATTAATCTAT
ATCGCGAAGCAATTTTTTTTTATTGTTGTGTTATTTTTACGTCACAATTA
TTTTAATGTGGACCTATTTTTTTTTTTTTACTATTTTTTCTGTGTTTTCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no365_m19.g1 MSMg01no365_m19.g1 CHROMAT_FILE:
MSMg01no365_m19.g1 PHD_FILE: MSMg01no365_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:23 2005
         (410 letters)



>mm_chr18_44484783_44485591
          Length = 809

 Score =  777 bits (402), Expect = 0.0
 Identities = 408/410 (99%), Gaps = 1/410 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   accttgttagctacatcagttgagaacttttgtggctgccagagcgtctggcctctgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 accttgttagctacatcagttgagaacttttgtggctgccagagcgtctggcctctgagt 550

                                                                       
Query: 61  gctgaactctagagagaaaccctataaagagcagagaaactggccgtggcaggaagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gctgaactctagagagaaaccctataaagagcagagaaactggccgtggcaggaagacac 490

                                                                       
Query: 121 aaatgtaatgcttccccccatgggaagaggaggattaagggagagagtgtgtgggaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aaatgtaatgcttccccccatgggaagaggaggattaagggagagagtgtgtgggaaact 430

                                                                       
Query: 181 tctggaacttcttgtaagaaacacaccttataaataaatagaaggtcagccagtacaaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 tctggaacttcttgtaagaaacacaccttataaataaatagaaggtcagccagtacaaga 370

                                                                       
Query: 241 ggctaaaatttcctctaacctccctgacatgcctcaaaggagaagttggaaaacatcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ggctaaaatttcctctaacctccctgacatgcctcaaaggagaagttggaaaacatcagc 310

                                                                       
Query: 301 caaaaaagtgttagtcccaagtgagagttggggacttagattttgtatctgcttcttttc 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 309 caaaaaagtgttagtcccaagtgagagttggggacttaggttttgtatctgcttcttttc 250

                                                             
Query: 361 catgaggaaaaaaaaatccaacttttagataacggggatgttaaattgtg 410
           |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 catgag-aaaaaaaaatccaacttttagataacggggatgttaaattgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 809
Length adjustment: 9
Effective length of query: 401
Effective length of database: 800
Effective search space:   320800
Effective search space used:   320800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)