Query= MSMg01no365_n17.b1 MSMg01no365_n17.b1 CHROMAT_FILE:
MSMg01no365_n17.b1 PHD_FILE: MSMg01no365_n17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:28 2005
(579 letters)
>mm_chr18_48349780_48350759
Length = 980
Score = 1044 bits (540), Expect = 0.0
Identities = 567/576 (98%), Gaps = 1/576 (0%)
Strand = Plus / Plus
Query: 5 gaattcctgattctcc-caatggaagttgcaaatgaaagatggaggggctggcattttct 63
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgattcacagcaatggaagttgcaaatgaaagatggaggggctggcattttct 264
Query: 64 ctcagtcataccactgtgccacacatgggggatagaaactatacaggtgtgggggggggg 123
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 265 ctcagtcataccactgtgccacacatgggggatagaaactatacaggtgtgtgggggggg 324
Query: 124 tagcaaacatacctctgttgtaatatcattgattccattgtgatcacgagcctatcttct 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tagcaaacatacctctgttgtaatatcattgattccattgtgatcacgagcctatcttct 384
Query: 184 tccagtcacatccacctcccaatacctctgcactgttggtcatctatttcatctcttgtc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tccagtcacatccacctcccaatacctctgcactgttggtcatctatttcatctcttgtc 444
Query: 244 tcatacatgtatctgggaacaaatgcaaacctctgaagttattcttaaaatttccaaagt 303
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 445 tcatacatgtatctgggaacaaatgcaaaccacagaagttattcttaaaatttccaaagt 504
Query: 304 ttctcgtctctcttttaaaaatatatctcctacatagataattattcttacatattctga 363
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttctcatctctcttttaaaaatatatctcctacatagataattattcttacatattctga 564
Query: 364 gcatattcattattttaataactaaatgataggtatacccattaataatcttatttgtta 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcatattcattattttaataactaaatgataggtatacccattaataatcttatttgtta 624
Query: 424 tatattctgactttcaaccactattgatctacctatatttaatatcttttatgtgaatct 483
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatattctgactttcaaccattattgatctacctatatttaatatcttttatgtgaatct 684
Query: 484 gtgtgattgctctcataatcttaaaggtttgtactattttttaaaaagtattttggaaag 543
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 685 gtgtgattgctctcataatcttaaaggtttgtactatttttttaaaagtattttggaaag 744
Query: 544 cccggcatggtggtggcacatgcctttaatcccagc 579
||||||||||||||||||||||||||||||||||||
Sbjct: 745 cccggcatggtggtggcacatgcctttaatcccagc 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 980
Length adjustment: 10
Effective length of query: 569
Effective length of database: 970
Effective search space: 551930
Effective search space used: 551930
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no365_n17.g1 MSMg01no365_n17.g1 CHROMAT_FILE:
MSMg01no365_n17.g1 PHD_FILE: MSMg01no365_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:02:28 2005
(504 letters)
>mm_chr18_48517432_48518334
Length = 903
Score = 862 bits (446), Expect = 0.0
Identities = 495/524 (94%), Gaps = 21/524 (4%)
Strand = Plus / Minus
Query: 1 ctgacttatttcatagttctatttaaattaaagaggagagagaaaagggagtataacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 548 ctgacttatttcatagttctatttaaattaaagaggagagagaaaagggagcataacttt 489
Query: 61 ggtccaccataaagaataaagtggaatagaagctcaccgaagtcaagaggctaaaaatga 120
||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||
Sbjct: 488 ggtccaccataaagaataaagtggaatag-agctcaccgaagtgaaggggctaaaaatga 430
Query: 121 atcgttagatacaccacaatttaactctgggactattttaatcattgattcactataact 180
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 atcgttagatataccacaatttaactctgggactattttaatcattgattcactataact 370
Query: 181 taacagtgtggtaataacactaaaggaacaatttattaggtataaataattaagagttaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 taacagtgtggtaataacactaaaggaacaatttattaggtataaataattaagagttaa 310
Query: 241 tcaccaatgaacaaacctacagacccagataggaaacaatattttatatattttgagtta 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 309 tcaccaatgaacaaacctacagacccagataggaaacaatgttttatatattttgagtta 250
Query: 301 gtaccagttatgtactctatcagacattaaatatggagaaagaaaacattatatatatat 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gtaccagttatatactctatcagacattaaatatggagaaagaaaacattatatatatat 190
Query: 361 atatatacatatatatatatatgaaaacattatattatatataatatatatac------- 413
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 atatatgtatatatatatatatgaaaacattatattatatataatatatatacatatata 130
Query: 414 -------------atatatatccaatgaatactaaaagaaatatctttctccttgaattt 460
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 tatacatatatatatatatatccaatgaatactaaaagaaatatctttctccttgaattt 70
Query: 461 ttagtttcctttcatttggtacaaaaattctagaaacaggctta 504
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 ttagtttcctttcatttggtacaaaaattctagaaacaggctta 26
Score = 58.7 bits (30), Expect = 9e-13
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 353 atatatatatatatacatatatatatatat 382
||||||||||||||||||||||||||||||
Sbjct: 168 atatatatatatatacatatatatatatat 197
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 91
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 504
Length of database: 903
Length adjustment: 10
Effective length of query: 494
Effective length of database: 893
Effective search space: 441142
Effective search space used: 441142
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
