Query= MSMg01no367_l20.b1 MSMg01no367_l20.b1 CHROMAT_FILE:
MSMg01no367_l20.b1 PHD_FILE: MSMg01no367_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:59 2005
(503 letters)
>mm_chr18_57632110_57633014
Length = 905
Score = 915 bits (473), Expect = 0.0
Identities = 494/501 (98%), Gaps = 2/501 (0%)
Strand = Plus / Minus
Query: 5 gaattcatttagaatccgttgaaatctctccaagaggctgcttaattttgaaacccgcaa 64
|||||||||||||| | |||||||||||||||||| ||||||||||||||||||| ||||
Sbjct: 705 gaattcatttagaagcggttgaaatctctccaagaagctgcttaattttgaaaccagcaa 646
Query: 65 tcagctcacttgcaatttacaaatttaaaatgttcaacggcatgcttaagtggaagggga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 tcagctcacttgcaatttacaaatttaaaatgttcaacggcatgcttaagtggaagggga 586
Query: 125 aaaaa-tcagatt-aaaaaaaaaaaaggaatgaagaagtaagcatcattgcttaacaacc 182
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 aaaaactcagattaaaaaaaaaaaaaggaatgaagaagtaagcatcattgcttaacaacc 526
Query: 183 accatgcacaaatattcaggcacctaaattttttaaagcccaacttaaagtaaaatgtcc 242
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 525 accatgcacaaatattcaggcacctaaatttttaaaagcccaacttaaagtaaaatgtcc 466
Query: 243 ctgtttcagtaaaaaattattcttacaaaatgttcaatggtgcttttaactaaatagtga 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctgtttcagtaaaaaattattcttacaaaatgttcaatggtgcttttaactaaatagtga 406
Query: 303 aatcttccttttatgaacagcaataatgaaatcttttttattttattttacttttttatg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 aatcttccttttatgaacagcaataatgaaatcttttttattttattttacttttttatg 346
Query: 363 aacaaagacatctgagaaaacagggttttggcatgatcacccagagtcttactaatagca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 aacaaagacatctgagaaaacagggttttggcatgatcacccagagtcttactaatagca 286
Query: 423 catggcagttattttaagtataaagaaagaccatggttactcacagcagcgtctggccct 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 catggcagttattttaagtataaagaaagaccatggttactcacagcagcgtctggccct 226
Query: 483 ggcgggatttccccatcatgt 503
|||||||||||||||||||||
Sbjct: 225 ggcgggatttccccatcatgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 905
Length adjustment: 10
Effective length of query: 493
Effective length of database: 895
Effective search space: 441235
Effective search space used: 441235
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no367_l20.g1 MSMg01no367_l20.g1 CHROMAT_FILE:
MSMg01no367_l20.g1 PHD_FILE: MSMg01no367_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:04:59 2005
(244 letters)
>mm_chr18_57438726_57439367
Length = 642
Score = 429 bits (222), Expect = e-125
Identities = 238/244 (97%), Gaps = 4/244 (1%)
Strand = Plus / Plus
Query: 1 actctagagttataatcaatctgtacatattaattggtatggaatatgtctttgtctgaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctagagttataatcaatctgtacatattaattggtatggaatatgtctttgtctgaa 260
Query: 61 tattagttttgctttcatttaggctggttcccattgctgggataagaaagcctttggaga 120
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 t--tagttttgctttcatttaggctggttcccattgctgggataagaaagcctttagaga 318
Query: 121 gagggatgcttgttgttataggtgattttatagtatgtgttttaatccattggg-gggat 179
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
Sbjct: 319 gagggatgcttgttgttataggtgattttatagtgtgtgttttaatccattgggaggg-t 377
Query: 180 tccaaaagtaatcgccatatgttcagatctgtgcattgcaagcctctgatggattcaggc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tccaaaagtaatcgccatatgttcagatctgtgcattgcaagcctctgatggattcaggc 437
Query: 240 tggc 243
||||
Sbjct: 438 tggc 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 642
Length adjustment: 9
Effective length of query: 235
Effective length of database: 633
Effective search space: 148755
Effective search space used: 148755
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
