Query= MSMg01no368_f04.b1 MSMg01no368_f04.b1 CHROMAT_FILE:
MSMg01no368_f04.b1 PHD_FILE: MSMg01no368_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:44 2005
(645 letters)
>mm_chr18_69130476_69131520
Length = 1045
Score = 1147 bits (593), Expect = 0.0
Identities = 629/641 (98%), Gaps = 1/641 (0%)
Strand = Plus / Plus
Query: 5 gaattctctgttcatcctttgttcatctcattgaaataaaagaaccaaacaaaatgatat 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgttcatcctttgttcatctcattgaaataaaagaaccaaacaaaatgatat 264
Query: 65 tacttctgacagaaggtctttagactgccttccttctcttcaacttttatctatcctatg 124
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 265 tacttctgacagaaggtctttagactgccttccttctcttcaaattttatctatcctatg 324
Query: 125 tcatatttcattaagccaccatcaataatgggtggcaatgtctatagtgactttttattg 184
||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct: 325 tcatatttcattaagccaccatcaatagttggtggcaatgtctatagtgacttttgattg 384
Query: 185 caagcaaattgcaatgtctcctctcttaacatatatctattctatgatttcttgactctg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagcaaattgcaatgtctcctctcttaacatatatctattctatgatttcttgactctg 444
Query: 245 gagaaccctgcctcatacccttgcttaaccttttctttgactttttctttctcagaattt 304
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 445 gagaaccctgcctaatacccttgcttaactttttctttgactttttctttctcagaattt 504
Query: 305 actctgaagtccctggatttcttatccttatgatttcccctattgcattgaaaaaacatg 364
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 505 actctgaagtccctggatttcttatcctcatgatttcccctattgcattgaaaaaatatg 564
Query: 365 tacttttcttcagttatactgcttattatcataaagggctcttgtgggttttattgtaga 424
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 565 tacttttcttcagttatactgcttattatcataaagggatcttgtgggttttattgtaga 624
Query: 425 gacatgttgtcgtgtagtgcagtccggtcttcagttccctaagcagccaaggatgacctt 484
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gacatgttgtcctgtagtgcagtccggtcttcagttccctaagcagccaaggatgacct- 683
Query: 485 gaacttcggatcatctgtctttaccttttgcattcgctaccacatctggattattcagtg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gaacttcggatcatctgtctttaccttttgcattcgctaccacatctggattattcagtg 743
Query: 545 ccagagggtgaactcagggctctgtacatgctaggcatgcattatcaacttagtggtata 604
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ccagagggtgaactcggggctctgtacatgctaggcatgcattatcaacttagtggtata 803
Query: 605 cccaagcactatcctaaaggttttcacatgcttactaacct 645
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cccaagcactatcctaaaggttttcacatgcttactaacct 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no368_f04.g1 MSMg01no368_f04.g1 CHROMAT_FILE:
MSMg01no368_f04.g1 PHD_FILE: MSMg01no368_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:44 2005
(573 letters)
>mm_chr18_69288532_69289503
Length = 972
Score = 917 bits (474), Expect = 0.0
Identities = 505/516 (97%), Gaps = 3/516 (0%)
Strand = Plus / Minus
Query: 1 tgtgtgcggttgttaaagacatttaatttttaatttgctttcacagaatcggaaaaatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tgtgtgcggttgttaaagacatttaatttttaatttgctttcacagaatcggaaaaatat 454
Query: 61 ccttaaaaacttgattacataatgcctttgattacttaacaccttttacaagtttctgac 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 453 ccttaaaaacttgattacataatgcctttgattacttaacaccttttacaagtttctgtc 394
Query: 121 attttgtgtagaactggaaaagaaaataggtctcatttgtaattaaaagatggccatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attttgtgtagaactggaaaagaaaataggtctcatttgtaattaaaagatggccatatt 334
Query: 181 aaactttacagtataataacttttccttaggtttctggtttctaaatatcaatttagctt 240
|||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 333 aaactttacagtataataacttttccttaggtttttggttt-tcaatatcaatttagctt 275
Query: 241 actatttttgatgcttcaaaatttcaaatagaaggtttctataaaagagagcatgggtgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 actatttttgatgcttcaaaatttcaaatagaaggtttctataaaagagagcatgggtgc 215
Query: 301 attatagaaagtaaaaaaacaaaaacaaaaaaaaacaaaataaaaacggaatcaacagat 360
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 214 attatagaaagtaaaaaaacaaaaacaaaaaaa--caaaataaaaacggaatcaacagat 157
Query: 361 tttccttagggagctcagagaataactaagtgctttaaatacagcagaagagaaaacaca 420
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct: 156 tttccttagggagcccagagcataactaagtgctttaaatacagcagaagagaaaatgca 97
Query: 421 agagaggaaagaaggaaacggggaataaaaacatctatacctttaagtaaagatgcttaa 480
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 96 agagaggaaagaaggaaacggggaataagaacatctatacctttaagtaaagatgcttaa 37
Query: 481 gggccttgcattcaaatgaatgaattgaattaactt 516
||||||||||||||||||||||||||||||||||||
Sbjct: 36 gggccttgcattcaaatgaatgaattgaattaactt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 972
Length adjustment: 10
Effective length of query: 563
Effective length of database: 962
Effective search space: 541606
Effective search space used: 541606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
