BAC Information

Click to search

BAC

Clone NameMSMg01-368F20
Chromosome18 (Build37)
Map Location 31,851,830 - 32,010,435
singlet/doubletdoublet
Overlap geneSap130, LOC640549, Ammecr1l, Polr2d, EG626327, Wdr33
Upstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46
Downstream geneSft2d3, Lims2, Gpr17, Myo7b, Iws1, Proc, LOC546710, Map3k2, Ercc3, Bin1, Gypc, LOC100041160, LOC100041170, Tslp, Wdr36
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-368F20.T7 (MSMg01no368_f20.b1)MSMg01-368F20.TJ (MSMg01no368_f20.g1)
ACCAG475609AG475610
length753763
length of high quality
(start - end)		648 (44 - 691)493 (69 - 561)
definitionCHROMAT_FILE: MSMg01no368_f20.b1 PHD_FILE: MSMg01no368_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:47 2005CHROMAT_FILE: MSMg01no368_f20.g1 PHD_FILE: MSMg01no368_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:05:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,009,791 - 32,010,435)(31,851,830 - 31,852,320)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAGAAGACTGATATATTTTCATGTCAAGACCAAACTATCAAGTACTA
AGTAATAAATATAAAACATCACTGATAATCAATCACACTGAAAACTGTTA
AAAGTACAAAAGTGTTTGCCTTAACTACTCAAAAACTGGCTAGTGAGCTA
GCTCTCAGAAGAAAATGAAAAAAGACTCACTCCCTTCTTCTCCACAGTCA
GGGTTACAAAGCAAAGGCTGACCCTACTACTCTCTATGTAACCAAGGATG
ATGTTGAAATTCTCATCTTTCTCCTTCCCAGCATGAACTTCCTGGACACT
ACACTAGCATTTTGTCAACTGGGCTGCATCCCCAGGGAACTGTCATCTGT
AGTCTTTCACAGAAAGGTGCTATGGGTACTGCTATTGCTGCGAATTGACT
CTAGAGCCACACAAAAGAAAATTAAGTGTTTGCCATTCAGTAAAATCCTG
AAAGACATCTTTAATGTGCAAAATCCCCTACTTTGCAAATCAATGTTATT
TTTGTTAACTATTAATCACACTCAGAGGAAGAAATATAAAAACTAAAAAT
TAAAAAGAAATAGTAAAAACAACCAGCTTCTGTAACAAAAAAGAAACATA
CTGCATAAACAGCATGGATCCTGTCAAAAATATGTATTTAGGACTGNAAA
GATGGCTCACCAGNTAANAATGTTGGCTGCTCTTCCAGAAGGCCTGTGTT
TGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACAGGTAAATAATGATACATATATGGTTTAA
ATGTATTAGAAGAAGAAATAGCAGGGTGGAGATTGGAGGAGGGCTGCTAA
CCTTTTGTCACTGTGGACCTTTATGCGGGATTATAAAATGTCTCCTTGCC
AGGTGAAGCTGTACAAAGCAACTTTGAGCCATTGAAAGTGTTTGGGGTTA
GGGAGATGGGTCAGTCAATTGTAATGCTTGTGACGCAAGCATGAATACCT
GAGTTTAATCCCCAATGTCCACATAAAAGCCAAGAGTGGTGACCCATGTC
TATAGTCCTAGCACTGGGGAGGCAAAGACAGGAAAATGCTTGCTACCCAT
CCATTCTAAGCCTAATCAGTACACTCCAGGTTCAAGGAGAGATTCTTGTC
TAGAAATGTAAGAAAGAAACCCCTAAAGTAAACCCCTGACTTCCGTGTGC
ATGCTTGTGCATATGCAAGTACAACCCCATAACGATGTGCATGTGTGCAC
ATACCCAGTGCTTACTCCATGAGCTTTTGAAATGCTGCAGGGATGTAACT
CAGGGTTAAAGCACCTGGTCGGCTATTGTGACTTCTGGTGTGGAAACCCC
ANTGGCTTCAACCTATAAAGGAAAATAAGTTTTGACTTTTACTAAAACTG
GGTTTGTCCCTTATAGTATGGTAGAAAGGGGGGAAAAAAATTTTGTATCC
GAACACTTTAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no368_f20.b1 MSMg01no368_f20.b1 CHROMAT_FILE:
MSMg01no368_f20.b1 PHD_FILE: MSMg01no368_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:47 2005
         (648 letters)



>mm_chr18_32009588_32010635
          Length = 1048

 Score = 1216 bits (629), Expect = 0.0
 Identities = 641/645 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctagaagactgatatattttcatgtcaagaccaaactatcaagtactaagtaat 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 ggaattctagaagactgatatattttcatgtcaagaccaaactatcaagtactaagtaat 789

                                                                       
Query: 64  aaatataaaacatcactgataatcaatcacactgaaaactgttaaaagtacaaaagtgtt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 aaatataaaacatcactgataatcaatcacactgaaaactgttaaaagtacaaaagtgtt 729

                                                                       
Query: 124 tgccttaactactcaaaaactggctagtgagctagctctcagaagaaaatgaaaaaagac 183
           |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 728 tgccttaactactcaaaaactggctagttagctagctctcagaagaaaatgaagaaagac 669

                                                                       
Query: 184 tcactcccttcttctccacagtcagggttacaaagcaaaggctgaccctactactctcta 243
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 668 tcactcccttcttctccacagtcagggttacaaagcaaaggctaaccctactactctcta 609

                                                                       
Query: 244 tgtaaccaaggatgatgttgaaattctcatctttctccttcccagcatgaacttcctgga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tgtaaccaaggatgatgttgaaattctcatctttctccttcccagcatgaacttcctgga 549

                                                                       
Query: 304 cactacactagcattttgtcaactgggctgcatccccagggaactgtcatctgtagtctt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cactacactagcattttgtcaactgggctgcatccccagggaactgtcatctgtagtctt 489

                                                                       
Query: 364 tcacagaaaggtgctatgggtactgctattgctgcgaattgactctagagccacacaaaa 423
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 488 tcacagaaaggtgctatgggtactgctattgctgcgaattgactgtagagccacacaaaa 429

                                                                       
Query: 424 gaaaattaagtgtttgccattcagtaaaatcctgaaagacatctttaatgtgcaaaatcc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gaaaattaagtgtttgccattcagtaaaatcctgaaagacatctttaatgtgcaaaatcc 369

                                                                       
Query: 484 cctactttgcaaatcaatgttatttttgttaactattaatcacactcagaggaagaaata 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 cctactttgcaaatcaatgttatttttgttaactattaatcacactcagaggaagaaata 309

                                                                       
Query: 544 taaaaactaaaaattaaaaagaaatagtaaaaacaaccagcttctgtaacaaaaaagaaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 taaaaactaaaaattaaaaagaaatagtaaaaacaaccagcttctgtaacaaaaaagaaa 249

                                                        
Query: 604 catactgcataaacagcatggatcctgtcaaaaatatgtatttag 648
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 catactgcataaacagcatggatcctgtcaaaaatatgtatttag 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no368_f20.g1 MSMg01no368_f20.g1 CHROMAT_FILE:
MSMg01no368_f20.g1 PHD_FILE: MSMg01no368_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:05:47 2005
         (493 letters)



>mm_chr18_31851630_31852522
          Length = 893

 Score =  919 bits (475), Expect = 0.0
 Identities = 487/491 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacaggtaaataatgatacatatatggtttaaatgtattagaagaagaaatagcagggtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacaggtaaataatgatacatatatggtttaaatgtattagaagaagaaatagcagggtg 260

                                                                       
Query: 61  gagattggaggagggctgctaaccttttgtcactgtggacctttatgcgggattataaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagattggaggagggctgctaaccttttgtcactgtggacctttatgcgggattataaaa 320

                                                                       
Query: 121 tgtctccttgccaggtgaagctgtacaaagcaactttgagccattgaaagtgtttggggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctccttgccaggtgaagctgtacaaagcaactttgagccattgaaagtgtttggggt 380

                                                                       
Query: 181 tagggagatgggtcagtcaattgtaatgcttgtgacgcaagcatgaatacctgagtttaa 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 tagggagatgggtcagtcaattgtaatgcttgtgacccaagcatgaatacctgagtttaa 440

                                                                       
Query: 241 tccccaatgtccacataaaagccaagagtggtgacccatgtctatagtcctagcactggg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccccaatgtccacataaaagccaagagtggtgacccatgtctatagtcctagcactggg 500

                                                                       
Query: 301 gaggcaaagacaggaaaatgcttgctacccatccattctaagcctaatcagtacactcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaggcaaagacaggaaaatgcttgctacccatccattctaagcctaatcagtacactcca 560

                                                                       
Query: 361 ggttcaaggagagattcttgtctagaaatgtaagaaagaaacccctaaagtaaacccctg 420
           |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 ggttcaaggagagattgttgtctagaaaggtaagaaagaaacccctaaagtaaacccctg 620

                                                                       
Query: 421 acttccgtgtgcatgcttgtgcatatgcaagtacaaccccataacgatgtgcatgtgtgc 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acttctgtgtgcatgcttgtgcatatgcaagtacaaccccataacgatgtgcatgtgtgc 680

                      
Query: 481 acatacccagt 491
           |||||||||||
Sbjct: 681 acatacccagt 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |