Query= MSMg01no369_c23.b1 MSMg01no369_c23.b1 CHROMAT_FILE:
MSMg01no369_c23.b1 PHD_FILE: MSMg01no369_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:50 2005
(556 letters)
>mm_chr18_69413938_69414892
Length = 955
Score = 926 bits (479), Expect = 0.0
Identities = 527/552 (95%), Gaps = 15/552 (2%)
Strand = Plus / Minus
Query: 5 gaattcatctatttccaaggtacaaagtacaaattacagtgctgacacacagtagggacg 64
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 938 gaattcatctatttccaaggtgcaaagtacaaattacagtgctgacacacagtagggacg 879
Query: 65 tgaacagcctggttttggaattttggaggtaaagggagtgttactgcacaatcattgatt 124
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 878 tgaacagcctggttttggaattttggaggtaaagagagtgttaccgcacaatcattgatt 819
Query: 125 ctaacctcccattctgaatgaggaaacaagtccagagagagtaagtgacgtacccaaggt 184
|||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 818 ctaacctcccattctgaatgaggaaacaagtccagagagagtaa--------------gt 773
Query: 185 tacataggttgttggtgatttaaaacaccttctccgagaggtaataaataccataaacct 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 772 tacataggttgttggtgatttaaaacaccttctccgagaggcaataaataccataaacct 713
Query: 245 gtaccatagtggtgacctgaagctgctgtatctttgctgtccatatgaagagtaaaggga 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gtaccatagtggtgacctgaagctgctgtatctttgctgtccatatgaagagtaaaggga 653
Query: 305 ttcaaatgccaggcaatttatgagtgtaaagattgcaaaaaggaatgcttatcctggcta 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 652 ttcaaatgccaggcaatttatgagtgtaaagattgc-aaaaggaatgcttatcctggcta 594
Query: 365 aactgctttcaggttcctgcaatcccgttagtcacggcccctttacataaagtatccgct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 593 aactgctttcaggttcctgcaatcccgttagtcacggcccctttacataaagtatccact 534
Query: 425 gtgctaattataaaaaatgtcaggaatagccacgaaaaactctctatgaggcagaactat 484
||||||||||||||||||||||||||||||| ||||||| |||||| |||||||||||||
Sbjct: 533 gtgctaattataaaaaatgtcaggaatagccccgaaaaattctctacgaggcagaactat 474
Query: 485 acataaatganacttcataaaatggatttcttgaatgaattttggtttctacctatcaac 544
|||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 473 acataaatgaaacttcataaaatggatttcttgaatgaattttggtttctgcctatcaac 414
Query: 545 cattcccttggt 556
||||||||||||
Sbjct: 413 cattcccttggt 402
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 955
Length adjustment: 10
Effective length of query: 546
Effective length of database: 945
Effective search space: 515970
Effective search space used: 515970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_c23.g1 MSMg01no369_c23.g1 CHROMAT_FILE:
MSMg01no369_c23.g1 PHD_FILE: MSMg01no369_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:06:50 2005
(476 letters)
>mm_chr18_69382207_69383078
Length = 872
Score = 828 bits (428), Expect = 0.0
Identities = 461/476 (96%), Gaps = 10/476 (2%)
Strand = Plus / Plus
Query: 1 agttctcggcttccgtgtctggcagctcacaggggcctgtaactcatttcaggggacctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttctcggcttccgtgtctggcagctcacaggggcctgtaactcatttcaggggacctg 260
Query: 61 acaccctctcctcacctccttgggcacctcctgcatacgcgttacactcctacagatata 120
|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 acaccctctcttcacctccttgggcacctcctgcatacacgttacactcctacagatata 320
Query: 121 catacatatgcagaagtagaaagaaacagaaatcttttttttttaagcaaagtaaaactg 180
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 catacatatgcagaagtagaaagaaacagaaatctttttt----aagcaaagtaaaactg 376
Query: 181 tcctgctgccttttgaaatggaaaagagttcacgaaattcgtttgataaaatgaacattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tcctgctgccttttgaaatggaaaagagttcacgaaattcgtttgataaaatgaacattg 436
Query: 241 tgtgtgtttcaggcccctgcgagacatgtggtgtctgcagtttgaaccacacgaacatag 300
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 437 tgtgtgtttcaggcccctgtgagacctgtggtgtctgcagtttgaaccacacgaacatag 496
Query: 301 acatttgcctacgttagtctggcaaatgtgttgtggaaccacttgctaaaatgatagctg 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 acatttggctacgttagtctggcaaatgtgttgtggaaccacttgctaaaatgatagctg 556
Query: 361 cggag-ctcaggtagttcaaagtaaaccagacgaagccaggaacttcaaaaatacacaaa 419
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cg-aggctcaggtagttcaaagtaaaccagacgaagccaggaacttcaaaaatacacaaa 615
Query: 420 cagaaagacaaacaaacaaacaaacaaaaaccctcatcacacaagcccatggatgt 475
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 616 cagaaagacaaacaaacaaacaaa----aaccctcatcacacaagcccatggatgt 667
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 872
Length adjustment: 10
Effective length of query: 466
Effective length of database: 862
Effective search space: 401692
Effective search space used: 401692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
