Query= MSMg01no369_f11.b1 MSMg01no369_f11.b1 CHROMAT_FILE:
MSMg01no369_f11.b1 PHD_FILE: MSMg01no369_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:02 2005
(334 letters)
>mm_chr18_34431779_34432512
Length = 734
Score = 574 bits (297), Expect = e-168
Identities = 327/349 (93%), Gaps = 19/349 (5%)
Strand = Plus / Minus
Query: 5 gaattcttcctatataatctgagtactcaaaggtcaagttatcaaatctaaaagctgcac 64
|||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 gaattcttcctagataatctgagtactcaaaggtcaagttaccaaatctaaaagctgcac 439
Query: 65 tgtcaagttacttacattttcagttaaaggcaggctatctattctttttgtgaggttctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgtcaagttacttacattttcagttaaaggcaggctatctattctttttgtgaggttctg 379
Query: 125 aagttgagcataataccagtccttttccttctcttctttgtcaagatcagcaaggagtaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagttgagcataataccagtccttttccttctcttctttgtcaagatcagcaaggagtaa 319
Query: 185 tgatctgtttagaagaaaggtaaatttacacaagctaatacatattgcccggtagctctc 244
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 318 tgatctgtttagaagaaaggtaaatttacacaagctaatacatattgcctggtagctctc 259
Query: 245 agcagctgctgctggaagacaataatgaaccagtgagaacgcactg-------------- 290
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcagctgctgctggaagacaataatgaaccagtgagaacgcactgacttgggttttgaa 199
Query: 291 -----acttgggtattacaaccactgacttctgagtaccaagtgaaagg 334
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gtagcacttgggtattacaaccactgacttctgagtaccaagtgaaagg 150
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 734
Length adjustment: 9
Effective length of query: 325
Effective length of database: 725
Effective search space: 235625
Effective search space used: 235625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no369_f11.g1 MSMg01no369_f11.g1 CHROMAT_FILE:
MSMg01no369_f11.g1 PHD_FILE: MSMg01no369_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:02 2005
(468 letters)
>mm_chr18_34312231_34313098
Length = 868
Score = 868 bits (449), Expect = 0.0
Identities = 464/469 (98%), Gaps = 2/469 (0%)
Strand = Plus / Plus
Query: 1 ctggctcatggccataaccaatacaggcacaaatgccatttaattccacgcagctgttcc 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctggctcttggccataaccaatacaggcacaaatgccatttaattccacgcagctgttcc 260
Query: 61 cggcgctgtccatgggtgggtctgcctaggggtgtttcattcaatttacaaggagaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggcgctgtccatgggtgggtctgcctaggggtgtttcattcaatttacaaggagaaaat 320
Query: 121 gcacccctggttgcctggcaaagagccaggtttgctagaactttccaaacacttcgttga 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gcacccctggttgcctggcaaagagccagatttgctagaactttccaaacacttcgttga 380
Query: 181 ggggagagccactgagagtaacctggtcacagaaccggacagctgaaggcatccatcctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggagagccactgagagtaacctggtcacagaaccggacagctgaaggcatccatcctt 440
Query: 241 cctggatctctgccaggtgggtg-aggcattccagctttatcttatactgaaaaggtacg 299
|||||| |||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 441 cctggagctctgccaggtgggtggag-cattccagctttatcttatactgaaaaggtacg 499
Query: 300 tgctttgtgtcctgtataggactctcctaacttagggcattgaaaagatatcatcataca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctttgtgtcctgtataggactctcctaacttagggcattgaaaagatatcatcataca 559
Query: 360 tttgaacaaatggtgtgctggaaactattaagcaaatgaaatttacatggtaattaaggt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tttgaacaaatggtgtgctggaaactattaagcaaatgaaatttacatggtaattaaggt 619
Query: 420 gctattgatctatgtcaattaatgtaataaaggaaaatataatatctga 468
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gctattgatctatgtcaattaatgtaataaaggaaaatataatatctga 668
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
