BAC Information

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BAC

Clone NameMSMg01-370A09
Chromosome18 (Build37)
Map Location 86,968,101 - 86,968,439
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545269, LOC545270, LOC665402, Neto1, Cbln2, LOC100039872, LOC100039881, LOC665437
Downstream geneLOC435580, LOC546719, LOC383318, Ppia-ps18_1039.1, LOC329008
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370A09.T7 (MSMg01no370_a09.b1)MSMg01-370A09.TJ (MSMg01no370_a09.g1)
ACCAG476868AG476869
length799819
length of high quality
(start - end)
343 (42 - 384)232 (73 - 304)
definitionCHROMAT_FILE: MSMg01no370_a09.b1 PHD_FILE: MSMg01no370_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:56 2005CHROMAT_FILE: MSMg01no370_a09.g1 PHD_FILE: MSMg01no370_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:07:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CCAAGTGTCATGAATCAGAAACTTCACAGTTATGCTTCTTCTGTCTGGAA
CATTCTCAATAGATTCTTGCCGGTGTGCATTTTTTTCATCATTTCTATTT
TTTCCCCGTGAAAGGGTTTGTAGCTGCGTTATTTAGACAGCAGCCCTTCA
CTGTCATCTTATTCTGCCTGCTATTCTTCATCTGTCACTAAAGGCAAGTT
CATGTTTGTGCATTTGCTTATCTGTTCATCCTCTGTCTTTCCCAGTGGAA
ATGTGAGCACCACCACATCAGGGATGTGTCTCTCTACCAGACACCTTGTC
TTCAGCACACAGAACATTGTGCAGCACATGTGGAGTGTTTAATGACTAGC
CCTTTGATACAACGACTTCATATGTGTTTGTGACATGCGCACCACTTTTT
CCCTCCTTATCTTCTCTTTTTGTATCTCCATTCCCCTATCCTTTTCCCCC
CCTTTCTCTACTTCCTTACTCTTTTCCAACCTCTATAACCCCTCTATCTT
TCCTTCCCCCTTTTCCCCCCTCTCCTTACGTCTCTATCCCCTCCCTTCTA
TTCCCCCTCTCCTTCCTTTTCCACTCCATCCCCCCCTCCTTCCTTTTATC
TCCTTTCTTCTCCTCCCTTAACTATTCCCCTTTTTTCTACTTTCCCTTTT
TTTCATCCCTCTTTTTTTCTTCTCCGCCTATCTCATCTCCCGTCTTTTTT
ATTCTCTCCCTTCTTTCCCTCCTCTTCCCTTTATTTCCCTTTCCTCTTA
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTAATAGTCCCTGGATTAAAATGAGACT
GGAGAATACCTGTGAAGAGAAATGCATTGCTACTCTTTCTTTTGGTAATT
CTTTGGGTGGAGCAATCTTCAGGTGGCAGTCCCATTACCCTAGTGGCATA
TCTAAGCTGTTTCTAGAGAGAGTTAGCCTCTGTTTCTATCTGAAAATTTA
GAGAAATAAATTTTTGGTGAAGAAATTCCTGGCCAGGCTCCTCACCTTTA
GTATACTAAATTCATGCATTTCACCTGCTTCTTATATGTTAAATCAAATA
ATAAAATGCAGCTCTCCTTACCTTTATGAATGAATACTGTGATATAGACC
TCGACCCCTCACACCCCCCATAAGGGCGCTGCATTTCAGATCTTACCTCG
CCATTCCCCTTTTTGCCCAACTCTTCTCTTTTTCCCCTTTGTTTTTTCCC
CCGCATCTCTTTATTTCGCGTTCCCTTCTCCTTGGTCCTAGCTCTTTTTC
CTCTTTCCCTTCCCCTCCCTCCCTTCCTTTTTCCCCCCCTCTTCTCCCCT
CTCTCTTCTCCTTTTCTTCTTTCCCCCCCCCCCTCCCTCCCCCCTTTCCC
TTTCCCTTCTTCCTCCCCCTATTCTTTCTCTTCTGCCCCATTTTATTCCT
CCTTTATCCCCCCTTCTCTTCTTAATCTCCCCCTTCCACCCTTCACACCT
TCATACCATGCCCCTCCTCACCTCTTTCTTATTTTCTTCCACCTTCCCCT
GCTCCCTCTCTCCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_a09.b1 MSMg01no370_a09.b1 CHROMAT_FILE:
MSMg01no370_a09.b1 PHD_FILE: MSMg01no370_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:07:56 2005
         (343 letters)



>mm_chr18_86968014_86968756
          Length = 743

 Score =  640 bits (331), Expect = 0.0
 Identities = 337/339 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccaagtgtcatgaatcagaaacttcacagttatgcttcttctgtctggaacattc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gaattccaagtgtcatgaatcagaaacttcacagttatgcttcttctgtctggaacattc 367

                                                                       
Query: 65  tcaatagattcttgccggtgtgcatttttttcatcatttctattttttccccgtgaaagg 124
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tcaatagattctagccggtgtgcatttttttcatcatttctattttttccccgtgaaagg 307

                                                                       
Query: 125 gtttgtagctgcgttatttagacagcagcccttcactgtcatcttattctgcctgctatt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gtttgtagctgcgttatttagacagcagcccttcactgtcatcttattctgcctgctatt 247

                                                                       
Query: 185 cttcatctgtcactaaaggcaagttcatgtttgtgcatttgcttatctgttcatcctctg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 cttcatctgtcactaaaggcaagttcatgtttgtgcatttgcttatctgttcatcctctg 187

                                                                       
Query: 245 tctttcccagtggaaatgtgagcaccaccacatcagggatgtgtctctctaccagacacc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 tctttcccagtggaaatgtgagcaccaccacatcagggatgtgtctctctaccagacacc 127

                                                  
Query: 305 ttgtcttcagcacacagaacattgtgcagcacatgtgga 343
           ||||||||||||||||||||||||||||| |||||||||
Sbjct: 126 ttgtcttcagcacacagaacattgtgcagtacatgtgga 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)