BAC Information

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BAC

Clone NameMSMg01-370K01
Chromosome18 (Build37)
Map Location 82,203,391 - 82,203,800
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039458, LOC100040871
Downstream geneB020010K11Rik, Galr1, Mbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370K01.T7 (MSMg01no370_k01.b1)MSMg01-370K01.TJ (MSMg01no370_k01.g1)
ACCAG477330AG477331
length1,505759
length of high quality
(start - end)
---411 (72 - 482)
definitionCHROMAT_FILE: MSMg01no370_k01.b1 PHD_FILE: MSMg01no370_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:44 2005CHROMAT_FILE: MSMg01no370_k01.g1 PHD_FILE: MSMg01no370_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:08:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGGCGGGGGGGGGACTCGGTGCAATANTACTTTCTCTTGGGCTCAAGCG
TAGATTTGCATAGACTCACATGTTGTCCCCGACTCGTTTACACCTTCGTC
CCTGTATATACTTATTTAGTACTGTTGTCGGGTTTCTGCTTAGTGTCTGC
GGACGCTCTTTTATGCGGCTATTGTTGGTGGTCGTGTGTGTGGGTTGGCG
CTTTCACCCGCCTGCGCTGCTTATGCAGTGGGACGTTCGCGCGTTGCTCT
ATTAGTGCGCGTTTGAGTATTTGTGGTGTAGTCTGTGTTTCCGCCGGCTG
TCCTTCTATTTTGTTCTTTTGCTCTCCGTTTCCGCGGCTCTTGCTGTTCC
GCGTGTGTCCGCTCGTACTGGCGCGCGTTAGTGGCTAGTCTAGCGTTGCG
TCTACGGTTATTTATGTCTTGGCCCCGCTCTTCCCGGATCGGTTAGGCGC
GCTGCCTGTGTTCGGTCGGTATATCTCCCTTGCGCCGTCTCACACTTCCT
TTTGTCGCGGCGTGTCGGTGTGTCGCTGCGCTGATCTGTGCCGGTGTCTT
TATCACTACGCGTACGCCTCATGCGCATCATTATTCTTGTGACATCGTCT
GCGCGAGGCGAGTTCTTTCTCGTGTTTATGATATCGCACGAGCACCGCGA
TTGTGTGTTGTACGCGTTTGAGTGCGCGCGCAGGCAGAGAAACACATGTT
TCCGCGCGGAGAGTGCGGTCGCGTCTCGGTCTTACACTCTCGTCACGCGT
GAGGCTATCGCAGAAGTAGTTTCTAGAGCGCTTTGTACTTGTGATCTCGC
TGGGNTGTGGATTTGTTGTGTGTGTGCTATATNGCGGTGTGCGGCATAGC
GGCAGTATTTCGCGCCGGCGTGTAGATTGCGGGTCGGTCGTTGTGTTGTT
ATGCTGCTGCTCCCTGTGTATACCGCGCTGTGTCCTCTATGTTTCGCCAC
TACAGGATCGGGTGGGGTCTGTTTATTCGATATGTCGTTGACTTCGCGTG
TGTGTGCGCACACTGCGGTGCTGTACATACCGCTACGGGATATACTGTAG
TTAGTCGGCTTGGCGCGACGCGCTATAGTGCGCGCGCCACGGTGTCGCGC
GTATCAACGCTGTATACTACTTCGCGTGGCGGGCGGCAATTCGCTTGNGA
TGCGGCGCGCTCTGTTCACCTGTCGTGATGTATAACACGAACTGACGCAG
TGCGCACGCCGAGGCGAGGATTATCGCGATGCGTGATTGCTACATCCGTG
ATGTTATACAACACGTCGGTCGTGACGTCATCTGTCGCTACATGTTGTGT
CGTGATCTGCAGCTATTCTACGCGTGACTGATTTGTGTAGTCCCGTGTCG
TATGCGTGTGGTACGATTGCGTCGACGCGGCGGAGGCTACTCGTGGTGCG
CGCTGCGTCGTNATGTATCTGTCTCGCTTCGCGCCGTTCGCTGGGTATCG
GCGACGTATCCTATACGCCGCGGTACTATAATCGCCGTGTCTACCGGCTC
ATTTN
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACTATCTCTCCCAAACTTGGCCACTATCC
CCTCTCATCTCATGCTATTGATGAATGAGAATAGGTCTACATAGGCGTGA
CTCCAAAGCACATGGGAAAAGACATTTCATCTAAAAACTAACTAATGTGC
TGTATTTCCACACACTTCCATTGAAGCAGCAAGCAGTCCTGCAGAACCTC
GAGCTCCACTCTGGGTCACCATCTCCCCCTGCTGTCCTTCTGAGGTACTG
CAGCTTGGCATAAATATGAAACAGCCATGTTTCCTGTTCTGGCCTAGAGC
CTGGAGTCTTTGTAGTTCACAACTGCCTGTCCTAGTAGGAGTTCAGATTG
CAGGAGATTGAAGGTTCTCTAATTACAGTTTTTATTACGGGATATTGAAA
ATGACTTGGCGCGATACACCTTGTTTAAGGATCCAATGCAAGAAGCCGTG
CAGTCTCGTACCAGGCGCCAGATGATTCCAGTCTGACTCTCTCGTTTGTC
ACCGCAATTCTCAAAGACTCTCCGATCTGTTATCCGGGCAATACTCTTCT
CTTTAATATCCCTCGACTACACTATGTGTAGCTTCTTTCCGGGATTCTTC
CGATTTGCGCATTTTCTCCCTTTTTCCGTTACCCACTATTATCTTACTAT
TTTCCGCCCCCCAACCTTTGGTTCCTCTTTGCCCGTGCCACACTTCTCTC
CCCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_k01.g1 MSMg01no370_k01.g1 CHROMAT_FILE:
MSMg01no370_k01.g1 PHD_FILE: MSMg01no370_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:08:45 2005
         (411 letters)



>mm_chr18_82203191_82204000
          Length = 810

 Score =  663 bits (343), Expect = 0.0
 Identities = 394/411 (95%), Gaps = 1/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actatctctcccaaacttggccactatcccctctcatctcatgctattgatgaatgagaa 60
           ||||||| |||| ||| |||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 610 actatctgtccctaacgtggccactattccctctcatttcatgctattgatgaatgagaa 551

                                                                       
Query: 61  taggtctacataggcgtgactccaaagcacatgggaaaagacatttcatctaaaaactaa 120
           |||||||||||||| ||||||||||||||||||| |||||||||||| ||| ||||||||
Sbjct: 550 taggtctacataggtgtgactccaaagcacatggaaaaagacatttcgtctgaaaactaa 491

                                                                       
Query: 121 ctaatgtgctgtatttccacacacttccattgaagcagcaagcagtcctgcagaacctcg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 490 ctaatgtgctgtatttccacacacttccattgaagcagcaagcagtcctgtagaacctcg 431

                                                                       
Query: 181 agctccactctgggtcaccatctccccctgctgtccttctgaggtactgcagcttggcat 240
           ||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 430 agcaccactctgggtcactatctccctctgctgtccttctgaggtactgcagcttggcat 371

                                                                       
Query: 241 aaatatgaaacagccatgtttcctgttctggcctagagcctggagtctttgtagttcaca 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaatatgaaacagccctgtttcctgttctggcctagagcctggagtctttgtagttcaca 311

                                                                       
Query: 301 actgcctgtcctagtaggagttcagattgcaggagattgaaggttctctaattacagttt 360
           ||||||||||| | |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 310 actgcctgtcc-aataggagctcagattgcaggagattgaaggttctctaattacagttt 252

                                                              
Query: 361 ttattacgggatattgaaaatgacttggcgcgatacaccttgtttaaggat 411
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttattacgggatattgaaaatgacttggcgcgatacaccttgtttaaggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 810
Length adjustment: 9
Effective length of query: 402
Effective length of database: 801
Effective search space:   322002
Effective search space used:   322002
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)