BAC Information

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BAC

Clone NameMSMg01-370P21
Chromosome18 (Build37)
Map Location 51,714,050 - 51,714,366
singlet/doubletsinglet
Overlap genenone
Upstream geneHdhd1a, LOC100042373, LOC100042385, Prr16
Downstream geneEG240289, Ftmt, Srfbp1, Lox
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-370P21.T7 (MSMg01no370_p21.b1)MSMg01-370P21.TJ (MSMg01no370_p21.g1)
ACCAG477607AG477608
length781766
length of high quality
(start - end)		475 (37 - 511)318 (68 - 385)
definitionCHROMAT_FILE: MSMg01no370_p21.b1 PHD_FILE: MSMg01no370_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:13 2005CHROMAT_FILE: MSMg01no370_p21.g1 PHD_FILE: MSMg01no370_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGGA
CTGGAACTCAAGCAGGTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAA
GGATGTTACTTACTGGCTTGCTTCTGGCTTGCTCAGCTTGCTTTCTTATA
GAACTCAGGACTACCAACTCAGCGATGGCACCACCCACAAGGGGCCCTCT
CTCCTTCTCCCCTAATTGAGAAAATGCCTTATAGCTGGATCTCATGGACG
CATTTCCTCAAGGGAGGCTCCTTTCTCTGTGATAACTAACCCCAGCTTGT
GTCAAGGTGATACACAAAACCAGCCAGTGCACCAACACATGACTTATTGG
TTATAGTCATGTACTCTTTATAAGCTTATGTTCATCCCATAATACATAAT
GCATTTATTCCAACCTCAAAACATCCGCATCGTCTTTGTCTCCAAAGTGT
TCAAAATTCCAGTCTTGCTAAAGGCTCTCTTAACTGTGAGCTACTATAAT
ATTGAAACAAAATTACATAGTCCCAGTCTAGACTACCAAAAATTGAACAT
TCCCTTTCCAAAGATGGCAATGTAAATGTATCACAGGAAGAAATACTACC
CACTATGACATATACCACCCCATCTAAATCTATCCACAGTATTCTAAGAT
TCTGGGTATGAACCTATCTGGTCCCAAAAGGGCTTCCAATTAGCTCCCAT
TTCCCTCAGAATTTGGCATGCTTACTGAAACAATGGCCCGACCTCTCCTC
TTTGGCCACTTTTTCGCCGGTGAGACAATGA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACAGTATGGAAAGGAAACTAACCAAATCATGGA
AGCTCTAATTTGTAATGAACCACCAAATATACCTTAACTCTGCTTTATAA
GAATAATAAAGCTTAATGCCTTTTAAAACCATAAAGTATTTCTGAGTTCA
GCAGACTAGAAATGCTCTAAATCTATTAAGTGTTGGCAAGAACTAAAAAT
CGAGAAACTTATTCAAAGTGCAGACAGTCGGTTAAATAGAATTGGGTTCA
GCATCCCTGAGCTCAGAGGTGAGAAACCATAGAGGACCATTAAGAATAGT
TTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNTTTNNNNNT
TTNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTNTTTTTTTTNTTTNTTTTTTTTTTTTTTTTTTTTTTTNNTNTT
TTTNNTTTTTCTTTTTTCCTTTTTCCTTTTTTTTTTTTNTCNTCCTCTCC
CCTCTCTCTCTTCTTCCTTCTCNCCCCTTTTTTCTTTTTCCTTTCCCCCT
CCCCCCTCTCCCTTTCTTTTCTTCTCTTTCCTCTCTTCCTCCTTTTTCTC
TTTCTCTTCCTCCCCCCCCTCTCTCTTTTTTTCTCTTCTTTTCTCTCCTT
TTTCTTTTCCTCTTCTCCTCTTTTCTTTTTTTCCTCCCTTTCTTCCTCTC
TTTCCTTTCTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no370_p21.g1 MSMg01no370_p21.g1 CHROMAT_FILE:
MSMg01no370_p21.g1 PHD_FILE: MSMg01no370_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:13 2005
         (318 letters)



>mm_chr18_51713883_51714600
          Length = 718

 Score =  590 bits (305), Expect = e-173
 Identities = 314/317 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagtatggaaaggaaactaaccaaatcatggaagctctaatttgtaatgaaccaccaaa 60
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 484 acagtatggaaaggaaactaaccaaatcatggaagttctaatttgtaatgaaccaccaaa 425

                                                                       
Query: 61  tataccttaactctgctttataagaataataaagcttaatgccttttaaaaccataaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tataccttaactctgctttataagaataataaagcttaatgccttttaaaaccataaagt 365

                                                                       
Query: 121 atttctgagttcagcagactagaaatgctctaaatctattaagtgttggcaagaactaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atttctgagttcagcagactagaaatgctctaaatctattaagtgttggcaagaactaaa 305

                                                                       
Query: 181 aatcgagaaacttattcaaagtgcagacagtcggttaaatagaattgggttcagcatccc 240
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agtctagaaacttattcaaagtgcagacagtcggttaaatagaattgggttcagcatccc 245

                                                                       
Query: 241 tgagctcagaggtgagaaaccatagaggaccattaagaatagtttgtgtgtgtgtgtgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tgagctcagaggtgagaaaccatagaggaccattaagaatagtttgtgtgtgtgtgtgtg 185

                            
Query: 301 tgtgtgtgtgtgtgtgt 317
           |||||||||||||||||
Sbjct: 184 tgtgtgtgtgtgtgtgt 168


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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