BAC Information

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BAC

Clone NameMSMg01-371B16
Chromosome18 (Build37)
Map Location 27,269,572 - 27,269,725
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977
Downstream geneEG665646
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371B16.T7 (MSMg01no371_b16.b1)MSMg01-371B16.TJ (MSMg01no371_b16.g1)
ACCAG477693AG477694
length793814
length of high quality
(start - end)
363 (74 - 436)77 (45 - 121)
definitionCHROMAT_FILE: MSMg01no371_b16.b1 PHD_FILE: MSMg01no371_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:23 2005CHROMAT_FILE: MSMg01no371_b16.g1 PHD_FILE: MSMg01no371_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTTGTCTCTTGGAATATACCTTGCA
TGAGTTTTATGTCTTCTTGTATATCTCTCTGGGAATGTCCTTGTGGTGCC
TGCTCCTTGCCTGTAGGTCCAGGCGAGAGGAGAGAGGTCTTGGGGCTGAG
CTGGTTAATGAGTGTTGATGGCCCAAAGACGGAGTTTGGAGCTGAGATGA
AAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCACCCCATAATC
AGCATCCAAACGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAA
GGACGCAGATGTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAAT
ACAGAAGTGGATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCA
ATGGAGGAGCTAGAGAAAGTAGTCAAGGAGCTAAAGGGATCTGCAACCCT
ATAGGTGTAACAACATTATGAGGTATCCGGTACCCCGGAGCTCCTTGGTT
CTAGCTTGTTTATTTTTCTAAAGAAGGTCCTATCTGTCCTTCCTTGGATA
GAAAGGCCCTTTTGCCTCTGCCTTTCTTTTTTGCCCCCGATCTTGTGTAC
TTCCTGTCTTTTTATTGGTATTGGCTGCGATCTTATTCTCCCCTTCCTTT
TTTTCCTTTTNNGNGNGNGCGGNTGGGGTTGGTGTGGCGTTGTTTTNNTT
TTTTTTTTTCTTTTTGTTTTTCGNGTGTTTTTTTGTTGTTTTN
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGNATCGCGGAA
TTCAGATTTTTGATTGAATTAGTTGTGAAATTGAATATGGTGGTATTAAG
TATTGTTTCTTTGATTTTTGTTACCGACACAAGGATANGTACCTTACACA
AAGCATCCACTTTGACGACAGATGATATGAGTTCCCTGCCCGCTACTCTA
GGAACATAGATGCCATTGAGCCTTACCTACCTTGCCATCTCACTTAACTC
CCACCTGACTCATCACGACCTTACCCTCCTTGTCTTGACTTAATACCACC
TTGCACTCTATTCCCTTCTCTTTTTTTTAGTCCACTCGATCGCCTCACAG
TCTTGTTCCCCCTTTTTTCCTCGCCCTTGCCGGCCTTTATCTCTATCCTT
CCGTCCGCTCGTGCCCCCCCCCCTCCCCCCCTCTTTCGCCGCTTCGGTTT
GGCGTCGCGTTCCGTTCTCTTTATCTCCGCGCTCTTCCTTTCCCTTTCCC
TCCTTCCTCCCCCCTCCTTTCCCAATTCCCACCCGCTCGTTCCCCTTCTT
CCCCTTCCTTTCCCCTCCCTTCCTCATTACTCCTTCCGTTCTTCCCTTCT
CAAACACCCCCTCTCCTCCCCCTTCCTGCTCCCCCCTTCTCCACCACCCT
AACCTCTCCTTCCTACCGCGCGCGGGTCCGTGTCTCCTCTTGCCTTCCCC
TTTTTTCCTTCCTGTTCTCTTCCTTCCACTCTCTCCTCCTTTTTTCCCCT
TCCGCTCTTCCCCCCCCCTTCCTTCCTCCCTTTCTCCCCCCGTTCTATTT
CGTGACTATTGTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_b16.b1 MSMg01no371_b16.b1 CHROMAT_FILE:
MSMg01no371_b16.b1 PHD_FILE: MSMg01no371_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:23 2005
         (363 letters)



>mm_chr18_27269376_27270138
          Length = 763

 Score =  275 bits (142), Expect = 4e-78
 Identities = 151/154 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttgtctcttggaatataccttgcatgagttttatgtcttcttgtatatctctctggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aggttgtctcttggaatataccttgcatgagttttatgtcttcttgtatatctctctggg 291

                                                                       
Query: 61  aatgtccttgtggtgcctgctccttgcctgtaggtccaggcgagaggagagaggtcttgg 120
           |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 290 aatgtccttgtggtgcctgctccttgccagcaggtccaggcgagaggagagaggtcttgg 231

                                             
Query: 121 ggctgagctggttaatgagtgttgatggcccaaa 154
           |||||||||||||| |||||||||||||||||||
Sbjct: 230 ggctgagctggttagtgagtgttgatggcccaaa 197


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 363
Length of database: 763
Length adjustment: 9
Effective length of query: 354
Effective length of database: 754
Effective search space:   266916
Effective search space used:   266916
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)