BAC Information

Click to search

BAC

Clone NameMSMg01-371H12
Chromosome18 (Build37)
Map Location 58,120,935 - 58,121,446
singlet/doubletsinglet
Overlap genenone
Upstream geneC330018D20Rik, Megf10, LOC672445, Prrc1, 1700011I03Rik, 4930511M06Rik, 2210409D07Rik, Slc12a2, 9330166H04Rik
Downstream geneFbn2, Slc27a6, Isoc1, Adamts19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-371H12.T7 (MSMg01no371_h12.b1)MSMg01-371H12.TJ (MSMg01no371_h12.g1)
ACCAG477969AG477970
length759769
length of high quality
(start - end)
---526 (53 - 578)
definitionCHROMAT_FILE: MSMg01no371_h12.b1 PHD_FILE: MSMg01no371_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:55 2005CHROMAT_FILE: MSMg01no371_h12.g1 PHD_FILE: MSMg01no371_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:09:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACTTTGGGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACCTCGCCTCTATTTACCTAACATGNNAAAT
GATTGCTGCAAGACCTGNNAGTAATTCTGCTGTGTCTCCTGTTTGTCTTT
ACATCTCAAATCAAAAATTTGAATTTCTCCNNNTGAGAGTGGTGCATCAG
GGGGGGGGAGGAGGAGGGGGGGGTGAGGGGGGGGAGTGGTCNTCTATTAC
TCTCTNNNNNNNNNNNNNNNNNCCCCCTTTCCGAACCCCCCCCGGAAAAA
TTCCCCTTTTTTTAAATATTTTTTCTTTTTGCCCCCAAAAAAAAAAAACN
NNAACTGGAAAATTTTTTCTTCTTTTAAAANCCAAATTTTTTNTTTTACC
CCTTTTTTTCCCCTCCTAAAAATTTTTTTTCTCCCCCCCNNAAAAACCCC
CCCCCCCGTATATTGGCCCCCAAGACCCCCAAAAAAACTACATCTTTTTT
TTTATAAATCTTTTCTCCTTTCCCCCTTCTCCCCTCTTCCTTTCTTNNTT
TCTTCTTTCTTCCTTCTTCCTTTTCCNCTTTCTCTTCTTCTCCTTCCCCT
TCTCCTTTCCCTTCTTTTTNNTTTTTTCCCTTCTCNTTTTCNNCNCTTTT
CCCCCTTTCTTTCCCCCCTCTTTCTTCCCTCTTCCCTCCCCTTCCCTTTA
TCCNCCTTCTTCTTTCCCTCCTCTTTCCTACTCTTCTTTATTTTTTTATT
GGTGGTTTG
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGG
AATTCTTGACCATTTCCGTACTCTGTAGACTCTGATTTCTAGAGTCCAGC
CAGGTGCAGTGCCTCACCCGATCCTGCTATTTTAGTCTCCCTCTTCCTTT
ATCCACCCTTTGAGCCACACCTTTATATCAAGTATCAAGCCCAGAGACTG
GCTATGCCATTCGGAGCATTTCTCTGGCCCCTTTCTCCCTAGGGCCTTCC
AACCACCTGCCGTGTACACTGAAGTGCTCCCATGAGACCCCAGAGCTGTG
TCTGCCAACCCTGAGTGATCCCATGACTCCTCCACAGTGTCTCCTTGCTG
GTTATTCAGCAAACTCAAGCACGGGCCTAAGAAACTAAGCATAAATCATT
TTAGCTCTCCAGTTCTGGAGGGGGCTTTGCAGGTTGACCAATTTCAATAT
TTTTTCTCATGTGAGTATCAACGGTTTTTTAATGAATCTGCTGCTGTCCT
CTCCCTCCCATTCCAAACTCTTTTGACACTAAAGCAAGGGGAAGCTTCCA
AACACACAGCTCCCCTACTTTTTTTTTTTTTTTTCCCACTGAGTTGAAGC
TCGGGACCTCCCTTGTTTGAGGGAAAGTCCATTTTGTTATTCTGGCCTGG
GTAATTAAAGATCCTAGGGGGAAAAAAACCTTTACTGGCCGGCTCTCCAA
GAATTTTGTTTTAGGGTACTCAAAAAACGTGTTGGCCCTTTGTGTTCCCT
TATTTAAAAACCTGGCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no371_h12.g1 MSMg01no371_h12.g1 CHROMAT_FILE:
MSMg01no371_h12.g1 PHD_FILE: MSMg01no371_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:55 2005
         (526 letters)



>mm_chr18_58120721_58121646
          Length = 926

 Score =  936 bits (484), Expect = 0.0
 Identities = 505/512 (98%)
 Strand = Plus / Plus

                                                                       
Query: 15  cgtactctgtagactctgatttctagagtccagccaggtgcagtgcctcacccgatcctg 74
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 cgtactctgtagactctgatttctagagtccagccaggtgcagtgcctcacccgatcctg 274

                                                                       
Query: 75  ctattttagtctccctcttcctttatccaccctttgagccacacctttatatcaagtatc 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctattttagtctccctcttcctttatccaccctttgagccacacctttatatcaagtatc 334

                                                                       
Query: 135 aagcccagagactggctatgccattcggagcatttctctggcccctttctccctagggcc 194
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gagcccagagactggctatgccattcggagcatttctctggcccctttctccctagggcc 394

                                                                       
Query: 195 ttccaaccacctgccgtgtacactgaagtgctcccatgagaccccagagctgtgtctgcc 254
           |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 395 ttccaaccacctgctgtgtacactgaagtgctcccacgagaccccagagctgtgtctgcc 454

                                                                       
Query: 255 aaccctgagtgatcccatgactcctccacagtgtctccttgctggttattcagcaaactc 314
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaccctgagtgatcccatgactcctccacagtgtctccttgctggttattcagcaaactc 514

                                                                       
Query: 315 aagcacgggcctaagaaactaagcataaatcattttagctctccagttctggagggggct 374
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 515 gagcacgggcctaagaaactaagcataaatcattttagctctccagttctggagggggcc 574

                                                                       
Query: 375 ttgcaggttgaccaatttcaatattttttctcatgtgagtatcaacggttttttaatgaa 434
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ttgtaggttgaccaatttcaatattttttctcatgtgagtatcaacggttttttaatgaa 634

                                                                       
Query: 435 tctgctgctgtcctctccctcccattccaaactcttttgacactaaagcaaggggaagct 494
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tctgctgctgtcttctccctcccattccaaactcttttgacactaaagcaaggggaagct 694

                                           
Query: 495 tccaaacacacagctcccctactttttttttt 526
           ||||||||||||||||||||||||||||||||
Sbjct: 695 tccaaacacacagctcccctactttttttttt 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)