Query= MSMg01no371_i05.b1 MSMg01no371_i05.b1 CHROMAT_FILE:
MSMg01no371_i05.b1 PHD_FILE: MSMg01no371_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:59 2005
(630 letters)
>mm_chr18_64939119_64940147
Length = 1029
Score = 1114 bits (576), Expect = 0.0
Identities = 619/634 (97%), Gaps = 6/634 (0%)
Strand = Plus / Plus
Query: 1 aattcattcaggtgaaaacagaaagatagctaagcaggggacacggtggcttgacat-ag 59
|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 201 aattcattcaggtgaaaacagaaagatagctaagcaggggactc-gtggcttgacatca- 258
Query: 60 cctgattacaattctggctggcgtaagttccagcaattcccatctgataggcagattgaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cctgattacaattctggctggcgtaagttccagcaattcccatctgataggcagattgaa 318
Query: 120 ctttaaagctgtctagagtacacagcaaccagcatagagcttcacacaagggctaccttg 179
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 319 ctttaaagctgtctagagtacacagcaaccagcatagagcttcccacaagggctaccttg 378
Query: 180 gcattgagctccagagagggaacactaacatttaaatgagttgtaagtccaatggctgat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gcattgagctccagagagggaacactaacatttaaatgagttgtaagtccaatggctgat 438
Query: 240 gctattacaggggaagaaagtcaaggaaaacatcaggaagaaagtcaagtgacatgggaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gctattacaggggaagaaagtcaaggaaaacatcaggaagaaagtcaagtgacatgggaa 498
Query: 300 cagaaactgggcagatgtggcagctagtcatgaaatatcaaagagggaaccataaactta 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cagaaactgggcagatgtggcagctagtcatgaaatatcaaagagggaaccataaactta 558
Query: 360 aaaaagaaaaataaggaaggattcccacctgcacattcaagaagggggcccaggcaagac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 aaaaagaaaaataaggaaggattcccacctgcacattcaagaagggggcccaggcaagac 618
Query: 420 tgtgacctcagactttggcctccagagctgtaagagactcagttgttgtcattctcaaca 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtgacctcagactttggcctccagagctgtaagagactcagttgttgtcattctcaacc 678
Query: 480 ctgctattctataaagacccaaggaaactcatatatgatatctaataatattaatatgta 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 ctgctattctataaagacccaaggaaactcatatgtgatatctaataatattaatatgta 738
Query: 540 ataatgtaatggcatgagtaatgctaagatgcaataaactcttgtgattaccttactatt 599
|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||
Sbjct: 739 gtaatgtaatggcatgagtaatgctaatatgcagtaaactcttgtgattacattactatt 798
Query: 600 acattaataataata--ata-taataataatgta 630
| ||||||||||||| ||| |||||||||||||
Sbjct: 799 atattaataataatataataataataataatgta 832
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1029
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1019
Effective search space: 631780
Effective search space used: 631780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no371_i05.g1 MSMg01no371_i05.g1 CHROMAT_FILE:
MSMg01no371_i05.g1 PHD_FILE: MSMg01no371_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:09:59 2005
(588 letters)
>mm_chr18_65056693_65057682
Length = 990
Score = 982 bits (508), Expect = 0.0
Identities = 548/562 (97%), Gaps = 4/562 (0%)
Strand = Plus / Minus
Query: 5 gaattctattgtatca-tttcttataggcctctaggtgtcattccaatgacgttattact 63
|||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 561 gaattctattgtatcagttt-ttataggtctctaggtgtcattccaatgacgttattact 503
Query: 64 atcatctccaaattaatcaatattcttcagtgctacctcctacccacaactctcactgct 123
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct: 502 atcatctccaaattaatcaatattcttcagtgctacgtcctacccacaactctgactgct 443
Query: 124 caattct--tcaagcctcctcctggaagtgaagccagggaagctctcacccggggctcga 181
||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caactcttctcacgcctcctcctggaagtgaagccagggaagctctcacccggggctcga 383
Query: 182 tgtgtcgtcttcaattaacgttcactggaagctaagacatgactgcaaggcaggaatgcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgtgtcgtcttcaattaacgttcactggaagctaagacatgactgcaaggcaggaatgcc 323
Query: 242 aaatgccagcttctgaagaatcagcaggaaggtggtaccctagggcccatggtgatggta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 aaatgccagcttctgaagaatcagcaggaaggtggtaccctagggcccatggtgatggta 263
Query: 302 tcgaatcaccatggagaggtcagctcaaagagccattgaactcatgcatcctctagaaca 361
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 262 tcgaatcaccatggagaggtcagctcaaagagtcactgaactcatgcatcctctagaaca 203
Query: 362 gtggctttcaaccttccgaatgcttcgaccctttaatacagttcctcgtgttgtggtaac 421
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtggctctcaaccttccgaatgcttcgaccctttaatacagttcctcgtgttgtggtaac 143
Query: 422 ccacccccaaccataaaattattttagttgctacctcatgacactgattgtgctgctgtt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ccacccccaaccataaaattattttagttgctacctcatgacactgattgtgctgctgtt 83
Query: 482 atgaatcaaaatgtaaatatctgatatgtgggatatctgataggtgacccctgagaacca 541
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 82 atgaatcaaaatgtaaatatctgatatgtgggatatctgataggtgacccctgaaaacca 23
Query: 542 ctactctagagttagcaaggct 563
|| |||||||||||||||||||
Sbjct: 22 ctgctctagagttagcaaggct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 990
Length adjustment: 10
Effective length of query: 578
Effective length of database: 980
Effective search space: 566440
Effective search space used: 566440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
