BAC Information

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BAC

Clone NameMSMg01-372G23
Chromosome18 (Build37)
Map Location 59,871,832 - 59,872,142
singlet/doubletsinglet
Overlap genenone
Upstream geneAdamts19, A730017C20Rik, 4833446K15Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372G23.T7 (MSMg01no372_g23.b1)MSMg01-372G23.TJ (MSMg01no372_g23.g1)
ACCAG478699AG478700
length795800
length of high quality
(start - end)		455 (38 - 492)382 (67 - 448)
definitionCHROMAT_FILE: MSMg01no372_g23.b1 PHD_FILE: MSMg01no372_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:10 2005CHROMAT_FILE: MSMg01no372_g23.g1 PHD_FILE: MSMg01no372_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GTTCATTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGT
CCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGAT
TTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGA
AAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATAT
TAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACAC
ATGAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCCTCC
TTAGATTTGGGAACAAAACACCCATGGGAAGGAGGTACAGAGAACGGAGT
TTTGGAGTTGAAATGAAAGGATGGACCCTGTAAAAAATGGCTTTTTTTAG
GGACCCACCCCTTATTTGCTTCCTAACGTTGGACCCTTGGGTTACCTCTT
AAAGAATTTTTTTGAAGGACGCCAAAGTANTTGTTCTTTGTAAAAAATTT
CGCGGGCCCCCAAAAATTAAAAGGAGTGTTTCCTTCTCCTTTAGG

GTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTAAGACATAGTTGTTTTTCGCTCTCAAGATGTA
GGTAATTATCCAGTCTTGTTACTTTCATCACAGCAAATGTAAATTCTGTA
GCTTAAGTGGATTCCTAAGCATTGCCACTGCCTGGATGCCTGTAAAAGTT
CCTTTTTATCCTTGTAATTCAGAATTAGCTGCAGTGTCTTTAAGAATATG
TCAACTGTGCCACCCCTCCACACCCTCACTGTTTCCTTCTCCTCCACTGT
ATCACTTGGCAATCCAATGAATTTATTATTTTAATTTTTTTCATACAATA
TATTTTGTTCATGTCCTTTCCTCTTTCCCAAGTCTTCACAGAAACTACCA
TTCCTTACCTACCCAACTTCATGTTCTTACTCCCTANNAAAAAAGATTAT
NAAAAAAGAAAGAAAAGAAAAGAAAGGGGGAGAAAAAAAGAAAACTCACC
CAATCCAATTCAATTAAAAAATACCTTAAAAAGTGTTTTCCAGACACAAA
AAGGCCGTTACCCATTGTGAAATCCAGGAAATGGGAAAGCATGTTTAAAA
ACTGTGGAAGTTCAAGCCCAAAAAATTCCACTCCCCCAAAAAAAAAGAAA
AGAGATTGAAAACCCCCTGGTCCCCAAAACACGTTTGCAATGGTATTTTT
CCGAAAAAAAAAAAACAAAAATTTTTTGGGGGGGGGTGGGCACCCCCCCA
GAATAAGAGTCCCCCCCCCAAAATACCATACTTTAAAACCCCGGCCCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_g23.g1 MSMg01no372_g23.g1 CHROMAT_FILE:
MSMg01no372_g23.g1 PHD_FILE: MSMg01no372_g23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:11 2005
         (382 letters)



>mm_chr18_59871832_59872613
          Length = 782

 Score =  555 bits (287), Expect = e-162
 Identities = 305/311 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaagacatagttgtttttcgctctcaagatgtaggtaattatccagtcttgttactttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ttaagacatagttgtttttcgctctcaagatgtaggtaattatccagtcttgttactttc 252

                                                                       
Query: 61  atcacagcaaatgtaaattctgtagcttaagtggattcctaagcattgccactgcctgga 120
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
Sbjct: 251 atcacagcaaatgtaaattctgtagcttaagtggattcctaaacattgccactgcccgaa 192

                                                                       
Query: 121 tgcctgtaaaagttcctttttatccttgtaattcagaattagctgcagtgtctttaagaa 180
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 191 tgcctttaaaagttcctttttatccttgtaattcagaattagccgcagtgtctttaagaa 132

                                                                       
Query: 181 tatgtcaactgtgccacccctccacaccctcactgtttccttctcctccactgtatcact 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 catgtcaactgtgccacccctccacaccctcactgtttccttctcctccactgtatcact 72

                                                                       
Query: 241 tggcaatccaatgaatttattattttaatttttttcatacaatatattttgttcatgtcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tggcaatccaatgaatttattattttaatttttttcatacaatatattttgttcatgtcc 12

                      
Query: 301 tttcctctttc 311
           |||||||||||
Sbjct: 11  tttcctctttc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 782
Length adjustment: 9
Effective length of query: 373
Effective length of database: 773
Effective search space:   288329
Effective search space used:   288329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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