BAC Information

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BAC

Clone NameMSMg01-372K22
Chromosome18 (Build37)
Map Location 40,321,543 - 40,509,924
singlet/doubletdoublet
Overlap geneYipf5, Kctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939
Downstream geneEG225416, LOC677182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-372K22.T7 (MSMg01no372_k22.b1)MSMg01-372K22.TJ (MSMg01no372_k22.g1)
ACCAG478889AG478890
length808808
length of high quality
(start - end)		502 (37 - 538)412 (67 - 478)
definitionCHROMAT_FILE: MSMg01no372_k22.b1 PHD_FILE: MSMg01no372_k22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:29 2005CHROMAT_FILE: MSMg01no372_k22.g1 PHD_FILE: MSMg01no372_k22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 23:11:29 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(40,321,543 - 40,322,027)(40,509,513 - 40,509,924)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAT
TTCTTTCACTTAAAAATTGAGATTAAAATCCCATGCTCTCCATTCCAGAG
GCATTGGACTTCTGCATTTGATCCCTATGTATGTAGGTTTAAAGGCCTTA
AACTAGATTTGGAAACCCTCGGGAAGCAGGTAGGTTGTGACAAAGATGTT
GCAAGCAGATAATAGTGTGGCTGAAGACTGAATAGAGGATCTTTAGGAGA
CCACACAAAACACACTGTCTAGGAAAAACATCAGGGTTATTTGGAAACTG
TTTCAGCACTTTGATAACACAAATTCTTGGGAGTTTGCTTTTGATCTCGT
TAAATAAAGCTATTTTCTGTTTTCCATATTAAAAACTTAACCCCATCTGG
CGTGATAACTCAGTGGGTAAAGATGCTTGTTGTCAAAACTGAAGATCTGA
GTTAGAAACCTGGGATTTGCTGATGGGAGGAGAGAACTGGTTGCATCAAG
TTGTCCCCTGATCTCTGCATGCATACCATAACATGAGAACACACATGAGT
ACATGCGCACCTAAATTATATAAGGCCACAGAAATTTATTAAGAAAACCA
TTGCCCTATTCAGTACTGCATAATGGGGGGTTTTCCTTATGGAAAATCCA
TTTTATTAATTTGGGTCGGGCAATGAATTAATTAAAACCAGGGCAGTTTG
GACTATGTTATTTTCCCTTGTCCAAAAAACCAAACCTTTGTTTTTACACC
CTCTCGGGCCGCCAAAAAACTAAACAAAATTTTGGTGGTTCTGGCTAACA
TTCTTTTT

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCAGAAACTAAAGTTTAATTTGTACTATTTTGTTT
ACTAGAAACATGAATTGATATTGAAGACAAGTTAATATATAACCACAGTT
TTAAGGCCAGCTAGGTCTTAGGAAAGGAATTTGTCTATCTACTGATTATT
CTCACTGAAATATAGATTGCCTCATTGGTAGAGGTAAAACTAGGGAAGTT
TGAATAATTTTCAGTTTTGCTCAAAATCTTGGCTCAACAACACAAAAGAG
TCTAGCCAGACCACAGTCTCCTCTCAATATCCCTCTACAACCACACCATG
TCCCTGGAAGACCAAAGAAGCCAAGTAGTGTGTGACCGGTGATAAGAGGT
AGATATCTACAGGCAGATAAAATATTAATGCCAGGTACATCACTATTATA
AACCTCTATTCTTTTNAATCCTTGGAAGACAAAGTCATGACTGCTTTCCA
TGAGCATCTGGTATATTAGGCACCCCAGGGTAAAATGTATCAGGTTGGGG
CAATTCTGGTCCCCCAATAAGCTAAAGAAAAGGGGCACCCATTAAGGGAA
TTTTTCTTTTTGTTCCAAACAGCTTGGATTAACTCCCTTCGAAAATTGGT
AAAAAAAACACCCACCCTGTGGGGAAGAAAAAACCTCGGCGCCCCTGCAA
GAACAATGTAATGGATCCCTTTCCTACCCTCTTCCGCGTTCCGAGGGCTC
CTGTAGAAATATTTGTCTTCTTTGTAAACTTATACAACTTCTTTCTTTTG
GTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no372_k22.b1 MSMg01no372_k22.b1 CHROMAT_FILE:
MSMg01no372_k22.b1 PHD_FILE: MSMg01no372_k22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:29 2005
         (502 letters)



>mm_chr18_40321326_40322227
          Length = 902

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%)
 Strand = Plus / Plus

                                                                       
Query: 18  tttcacttaaaaattgagattaaaatcccatgctctccattccagaggcattggacttct 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 tttcacttaaaaattgagattaaaatcccatgctctccattccagaggcattggacttct 277

                                                                       
Query: 78  gcatttgatccctatgtatgtaggtttaaaggccttaaactagatttggaaaccctcggg 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcatttgatccctatgtatgtaggtttaaaggccttaaactagatttggaaaccctcggg 337

                                                                       
Query: 138 aagcaggtaggttgtgacaaagatgttgcaagcagataatagtgtggctgaagactgaat 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 aagcaggtaggttgtgacaaagatgttgcaagcagataatagtgtggctgaagactgaat 397

                                                                       
Query: 198 agaggatctttaggagaccacacaaaacacactgtctaggaaaaacatcagggttatttg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 agaggatctttaggagaccacacaaaacacactgtctaggaaaaacatcagggttatttg 457

                                                                       
Query: 258 gaaactgtttcagcactttgataacacaaattcttgggagtttgcttttgatctcgttaa 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gaaactgtttcagcactttgataacacaaattcttgggagtttgcttttgatctcgttaa 517

                                                                       
Query: 318 ataaagctattttctgttttccatattaaaaacttaaccccatctggcgtgataactcag 377
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 518 ataaagctattttctgttttccatattaaaaacttaaccccatctggtgtgatagctcag 577

                                                                       
Query: 378 tgggtaaagatgcttgttgtcaaaactgaagatctgagttagaaacctgggatttgctga 437
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 tgggtaaagatgcttgttgccaaaactgaagatctgagttagaaacctgggatttgctga 637

                                                                       
Query: 438 tgggaggagagaactggttgcatcaagttgtcccctgatctctgcatgcataccataaca 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 tgggaggagagaactggttgcatcaagttgtcccctgatctctgcatgcataccataaca 697

                
Query: 498 tgaga 502
           |||||
Sbjct: 698 tgaga 702


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 902
Length adjustment: 10
Effective length of query: 492
Effective length of database: 892
Effective search space:   438864
Effective search space used:   438864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no372_k22.g1 MSMg01no372_k22.g1 CHROMAT_FILE:
MSMg01no372_k22.g1 PHD_FILE: MSMg01no372_k22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:11:29 2005
         (412 letters)



>mm_chr18_40509313_40510124
          Length = 812

 Score =  760 bits (393), Expect = 0.0
 Identities = 407/412 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaactaaagtttaatttgtactattttgtttactagaaacatgaattgatattgaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cagaaactaaagtttaatttgtactattttgtttactagaaacatgaattgatattgaag 553

                                                                       
Query: 61  acaagttaatatataaccacagttttaaggccagctaggtcttaggaaaggaatttgtct 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 552 acaagttaatatataaccacagttttaaggccagctaggtcttaggaaagaaatttgtct 493

                                                                       
Query: 121 atctactgattattctcactgaaatatagattgcctcattggtagaggtaaaactaggga 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atctactgatcattctcactgaaatatagattgcctcattggtagaggtaaaactaggga 433

                                                                       
Query: 181 agtttgaataattttcagttttgctcaaaatcttggctcaacaacacaaaagagtctagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agtttgaataattttcagttttgctcaaaatcttggctcaacaacacaaaagagtctagc 373

                                                                       
Query: 241 cagaccacagtctcctctcaatatccctctacaaccacaccatgtccctggaagaccaaa 300
           |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cagaccacagtcccctctcaacatccctctacaaccacaccatgtccctggaagaccaaa 313

                                                                       
Query: 301 gaagccaagtagtgtgtgaccggtgataagaggtagatatctacaggcagataaaatatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 gaagccaagtagtgtgtgaccggtgataagaggtagatatctacaggcagataaaatatt 253

                                                               
Query: 361 aatgccaggtacatcactattataaacctctattcttttnaatccttggaag 412
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 252 aatgccaggtacatcactattataaacctctattcttttaaatccttggaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space:   323609
Effective search space used:   323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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