Query= MSMg01no373_d23.b1 MSMg01no373_d23.b1 CHROMAT_FILE:
MSMg01no373_d23.b1 PHD_FILE: MSMg01no373_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:10 2005
(499 letters)
>mm_chr18_52984586_52985485
Length = 900
Score = 907 bits (469), Expect = 0.0
Identities = 489/497 (98%), Gaps = 5/497 (1%)
Strand = Plus / Plus
Query: 6 gaattctcttac-c--ttcatgctggaacagtgacagagtactagggcaagatttttggc 62
|||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctcttacacagt--atgctggaacagtgacagagtactagggcaagatttttggc 263
Query: 63 aatccagtgggggtagaaaaccctcagctggtatcagtaaaaacctctaacagtttgaaa 122
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatctagtgggggtagaaaaccctcagctggtatcagtaaaaacctctaacagtttgaaa 323
Query: 123 gcctaatgactgaagtcacagagaagatttgcacaggcacaattcagcatctaccatgaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gcctaatgactgaagtcacagagaagatttgcacaggcacaattcagcatctaccatgaa 383
Query: 183 gccctctgcagacgagcttgagataatcgcctgtgctgttctcatcctcgtgagcttcgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gccctctgcagacgagcttgagataatcgcctgtgctgttctcatcctcgtgagcttcgt 443
Query: 243 aggaaacatatctttattttattccacaagtaagtgcattgccgggggcctgcagacatc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggaaacatatctttattttattccacaagtaagtgcattgccgggggcctgcagacatc 503
Query: 303 tttcctcctcattatcagcctggtgtttgtccaccttattaaaaacctggtggtgaacac 362
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 504 tttcctcctcattatcagcctggtgtttgtccaccttattaaaaacctggtggtcaacac 563
Query: 363 cctcaagattgtttactcttccggtatcttgctggactccgttggctgcaaagctctgca 422
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 564 cctcaagattgtttactcttccggaatcttgctggactccgttggctgcaaagctctgca 623
Query: 423 cttcactgcagccctgacgacttccctgaccatctggttcatgttacactttgcgttgtt 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cttcactgcagccctgacgacttccctgaccatctggttcatgttacactttgcgttgtt 683
Query: 483 ctaccaccggaagcttt 499
|||||||||||||||||
Sbjct: 684 ctaccaccggaagcttt 700
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no373_d23.g1 MSMg01no373_d23.g1 CHROMAT_FILE:
MSMg01no373_d23.g1 PHD_FILE: MSMg01no373_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 23:12:10 2005
(442 letters)
>mm_chr18_53141298_53142139
Length = 842
Score = 828 bits (428), Expect = 0.0
Identities = 436/442 (98%), Gaps = 6/442 (1%)
Strand = Plus / Minus
Query: 1 cagattaagccgagtgtggtggcgcacgcctttaatcccagcacttgggaggcagaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cagattaagccgagtgtggtggcgcacgcctttaatcccagcacttgggaggcagaggca 614
Query: 61 ggcggatttctgagttcgaggtcaacctggtctacagagtgagttccaggacagccaggg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ggcggatttctgagttcgaggtcaacctggtctacagagtgagttccaggacagccaggg 554
Query: 121 ctatacagagaaaccctgtctcaaaacacaaaaacaaaaacaacaacaacaaaaagaatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ctatacagagaaaccctgtctcaaaacacaaaaacaaaaacaacaacaacaaaaagaatt 494
Query: 181 ccagattacccagagcacactcaaactctacaaacctctgctgacgaggtttgaaatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ccagattacccagagcacactcaaactctacaaacctctgctgacgaggtttgaaatgac 434
Query: 241 agaaagctaggttagaaatgggaaaaatcaggtcttttctatgattgtcagagagttaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 agaaagctaggttagaaatgggaaaaatcaggtcttttctatgattgtcagagagttaca 374
Query: 301 aactgctatatggtatgtatacacacacacacacacacacacacacacacacatatatat 360
||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 373 aactgctatatggtatgtatacacacacacacacacacacacacacaca------tatat 320
Query: 361 gagttctgatttgaatagttaacatggtggactttcaggccacaagtgacaataattatt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gagttctgatttgaatagttaacatggtggactttcaggccacaagtgacaataattatt 260
Query: 421 gcttgggatctatttccttcac 442
||||||||||||||||||||||
Sbjct: 259 gcttgggatctatttccttcac 238
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space: 360689
Effective search space used: 360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
